TY - JOUR
AU - Ohta, Hiroyuki
AB - Publicly available database of co-expressed gene sets would be a valuable tool for a wide variety of experimental designs, including targeting of genes for functional identification or for regulatory investigation. Here, we report the construction of an Arabidopsis thaliana trans-factor and cis-element prediction database (ATTED-II) that provides co-regulated gene relationships based on co-expressed genes deduced from microarray data and the predicted cis elements. ATTED-II () includes the following features: (i) lists and networks of co-expressed genes calculated from 58 publicly available experimental series, which are composed of 1388 GeneChip data in A.thaliana; (ii) prediction of cis-regulatory elements in the 200 bp region upstream of the transcription start site to predict co-regulated genes amongst the co-expressed genes; and (iii) visual representation of expression patterns for individual genes. ATTED-II can thus help researchers to clarify the function and regulation of particular genes and gene networks.
TI - ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
JF - Nucleic Acids Research
DO - 10.1093/nar/gkl783
DA - 2006-11-27
UR - https://www.deepdyve.com/lp/oxford-university-press/atted-ii-a-database-of-co-expressed-genes-and-cis-elements-for-SlWUm63JeR
SP - D863
EP - D869
VL - 35
IS - suppl_1
DP - DeepDyve
ER -