TY - JOUR
AU - Tiedje, J. M.
AB - The Ribosomal Database Project (RDP) provides researchers with quality-controlled bacterial and archaeal small subunit rRNA alignments and analysis tools. An improved alignment strategy uses the Infernal secondary structure aware aligner to provide a more consistent higher quality alignment and faster processing of user sequences. Substantial new analysis features include a new Pyrosequencing Pipeline that provides tools to support analysis of ultra high-throughput rRNA sequencing data. This pipeline offers a collection of tools that automate the data processing and simplify the computationally intensive analysis of large sequencing libraries. In addition, a new Taxomatic visualization tool allows rapid visualization of taxonomic inconsistencies and suggests corrections, and a new class Assignment Generator provides instructors with a lesson plan and individualized teaching materials. Details about RDP data and analytical functions can be found at http://rdp.cme.msu.edu/.
TI - The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
JF - Nucleic Acids Research
DO - 10.1093/nar/gkn879
DA - 2009-01-12
UR - https://www.deepdyve.com/lp/oxford-university-press/the-ribosomal-database-project-improved-alignments-and-new-tools-for-ki59cS1Co2
SP - D141
EP - D145
VL - 37
IS - suppl_1
DP - DeepDyve
ER -