Access the full text.
Sign up today, get DeepDyve free for 14 days.
V. Mootha, C. Lindgren, K. Eriksson, A. Subramanian, S. Sihag, J. Lehár, P. Puigserver, E. Carlsson, M. Ridderstråle, E. Laurila, N. Houstis, M. Daly, N. Patterson, J. Mesirov, T. Golub, P. Tamayo, B. Spiegelman, E. Lander, J. Hirschhorn, D. Altshuler, L. Groop (2003)
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetesNature Genetics, 34
R. Wharton, J. Sonoda, Tammy Lee, Michelle Patterson, Yoshihiko Murata (1998)
The Pumilio RNA-binding domain is also a translational regulator.Molecular cell, 1 6
A. Buness, W. Huber, Klaus Steiner, H. Sültmann, A. Poustka (2005)
arrayMagic: two-colour cDNA microarray quality control, preprocessingBioinformatics, 21 4
D. Spassov, R. Jurecic (2003)
The PUF Family of RNA‐binding Proteins: Does Evolutionarily Conserved Structure Equal Conserved Function?IUBMB Life, 55
D. Bernstein, B. Hook, A. Hajarnavis, Laura Opperman, M. Wickens (2005)
Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1.RNA, 11 4
M. Lee, B. Hook, G. Pan, Aaron Kershner, Christopher Merritt, G. Seydoux, J. Thomson, M. Wickens, J. Kimble (2007)
Conserved Regulation of MAP Kinase Expression by PUF RNA-Binding ProteinsPLoS Genetics, 3
Vivek Anantharaman, E. Koonin, L. Aravind (2002)
Comparative genomics and evolution of proteins involved in RNA metabolism.Nucleic acids research, 30 7
J. Keene, Jordan Komisarow, Matthew Friedersdorf (2006)
RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extractsNature Protocols, 1
T. Edwards, Scott Pyle, R. Wharton, A. Aggarwal (2001)
Structure of Pumilio Reveals Similarity between RNA and Peptide Binding MotifsCell, 105
T. Bailey, Nadya Williams, C. Misleh, Wilfred Li (2006)
MEME: discovering and analyzing DNA and protein sequence motifsNucleic Acids Research, 34
Claudia Walser, Gopal Battu, Erika Hoier, A. Hajnal (2006)
Distinct roles of the Pumilio and FBF translational repressors during C. elegans vulval development, 133
H. Mi, Nan Guo, A. Kejariwal, P. Thomas (2006)
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathwaysNucleic Acids Research, 35
L. Garcia-Rodriguez, A. Gay, L. Pon (2007)
Puf3p, a Pumilio family RNA binding protein, localizes to mitochondria and regulates mitochondrial biogenesis and motility in budding yeastThe Journal of Cell Biology, 176
A. Ahmed, Xiao Li, Munjiba, Shams, John, Gregory, Terry, Rollason, N. Barnes, J. Newtont (2003)
Binding Site
Chang Chan, O. Elemento, Saeed Tavazoie (2005)
Revealing Posttranscriptional Regulatory Elements Through Network-Level ConservationPLoS Computational Biology, 1
M. Mesarovic, S. Sreenath, J. Keene (2004)
Search for organising principles: understanding in systems biology.Systems biology, 1 1
Randi Ulbricht, W. Olivas (2007)
Puf1p acts in combination with other yeast Puf proteins to control mRNA stability.RNA, 14 2
Barrett Foat, S. Houshmandi, W. Olivas, H. Bussemaker (2005)
Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.Proceedings of the National Academy of Sciences of the United States of America, 102 49
E. Xu, Rhoda Chang, Nicholas Salmon, R. Pera (2007)
A gene trap mutation of a murine homolog of the Drosophila stem cell factor Pumilio results in smaller testes but does not affect litter size or fertilityMolecular Reproduction and Development, 74
J. Sonoda, R. Wharton (2001)
Drosophila Brain Tumor is a translational repressor.Genes & development, 15 6
S. Tenenbaum, Craig Carson, P. Lager, J. Keene (2000)
Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays.Proceedings of the National Academy of Sciences of the United States of America, 97 26
A. Forbes, R. Lehmann (1998)
Nanos and Pumilio have critical roles in the development and function of Drosophila germline stem cells.Development, 125 4
A. Subramanian, P. Tamayo, V. Mootha, Sayan Mukherjee, B. Ebert, Michael Gillette, A. Paulovich, S. Pomeroy, T. Golub, E. Lander, J. Mesirov (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profilesProceedings of the National Academy of Sciences of the United States of America, 102
Michael Parisi, Haifan Lin (1999)
The Drosophila pumilio gene encodes two functional protein isoforms that play multiple roles in germline development, gonadogenesis, oogenesis and embryogenesis.Genetics, 153 1
Jennifer Bachorik, J. Kimble (2005)
Redundant control of the Caenorhabditis elegans sperm/oocyte switch by PUF-8 and FBF-1, two distinct PUF RNA-binding proteins.Proceedings of the National Academy of Sciences of the United States of America, 102 31
M. Fox, J. Urano, R. Pera (2005)
Identification and characterization of RNA sequences to which human PUMILIO-2 (PUM2) and deleted in Azoospermia-like (DAZL) bind.Genomics, 85 1
A. Spik, Sławomir Oczkowski, A. Olszak, P. Formanowicz, J. Błażewicz, J. Jaruzelska (2006)
Human fertility protein PUMILIO2 interacts in vitro with testis mRNA encoding Cdc42 effector 3 (CEP3).Reproductive biology, 6 2
Brain Kraemer, S. Crittenden, M. Gallegos, G. Moulder, R. Barstead, J. Kimble, M. Wickens (1999)
NANOS-3 and FBF proteins physically interact to control the sperm–oocyte switch in Caenorhabditis elegansCurrent Biology, 9
I. Silanes, Ming Zhan, A. Lal, Xiaoling Yang, M. Gorospe (2004)
Identification of a target RNA motif for RNA-binding protein HuR.Proceedings of the National Academy of Sciences of the United States of America, 101 9
H. Hieronymus, P. Silver (2004)
A systems view of mRNP biology.Genes & development, 18 23
Regula Halbeisen, Alessia Galgano, Tanja Scherrer, A. Gerber (2007)
Post-transcriptional gene regulation: From genome-wide studies to principlesCellular and Molecular Life Sciences, 65
R. Pullmann, Hyeon Kim, K. Abdelmohsen, A. Lal, J. Martindale, Xiaoling Yang, M. Gorospe (2007)
Analysis of Turnover and Translation Regulatory RNA-Binding Protein Expression through Binding to Cognate mRNAsMolecular and Cellular Biology, 27
(2006)
RIP-Chip: the 4102
J. Kimble, S. Crittenden (2007)
Controls of germline stem cells, entry into meiosis, and the sperm/oocyte decision in Caenorhabditis elegans.Annual review of cell and developmental biology, 23
R. Lehmann, C. Nüsslein-Volhard (1987)
Involvement of the pumilio gene in the transport of an abdominal signal in the Drosophila embryoNature, 329
W. Olivas, R. Parker (2000)
The Puf3 protein is a transcript‐specific regulator of mRNA degradation in yeastThe EMBO Journal, 19
J. Keene (2007)
RNA regulons: coordination of post-transcriptional eventsNature Reviews Genetics, 8
Haifan Lin, A. Spradling (1997)
A novel group of pumilio mutations affects the asymmetric division of germline stem cells in the Drosophila ovary.Development, 124 12
A. Goldstrohm, Daniel Seay, B. Hook, M. Wickens (2007)
PUF Protein-mediated Deadenylation Is Catalyzed by Ccr4p*Journal of Biological Chemistry, 282
Miho Asaoka-Taguchi, M. Yamada, A. Nakamura, K. Hanyu, Satoru Kobayashi (1999)
Maternal Pumilio acts together with Nanos in germline development in Drosophila embryosNature Cell Biology, 1
A. Gerber, D. Herschlag, P. Brown (2004)
Extensive Association of Functionally and Cytotopically Related mRNAs with Puf Family RNA-Binding Proteins in YeastPLoS Biology, 2
N. Kedersha, P. Anderson (2007)
Mammalian stress granules and processing bodies.Methods in enzymology, 431
A. Goldstrohm, B. Hook, Daniel Seay, M. Wickens (2006)
PUF proteins bind Pop2p to regulate messenger RNAsNature Structural &Molecular Biology, 13
Xiaoqiang Wang, Juanita Mclachlan, P. Zamore, T. Hall (2002)
Modular Recognition of RNA by a Human Pumilio-Homology DomainCell, 110
J. Keene, S. Tenenbaum (2002)
Eukaryotic mRNPs may represent posttranscriptional operons.Molecular cell, 9 6
M. Wickens, D. Bernstein, J. Kimble, R. Parker (2002)
A PUF family portrait: 3'UTR regulation as a way of life.Trends in genetics : TIG, 18 3
J. Jackson, S. Houshmandi, Florencia Leban, W. Olivas (2004)
Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast.RNA, 10 10
J. Vessey, A. Vaccani, Yunli Xie, R. Dahm, D. Karra, M. Kiebler, P. Macchi (2006)
Dendritic Localization of the Translational Repressor Pumilio 2 and Its Contribution to Dendritic Stress GranulesThe Journal of Neuroscience, 26
S. Crittenden, D. Bernstein, Jennifer Bachorik, B. Thompson, M. Gallegos, Andrei Petcherski, G. Moulder, R. Barstead, M. Wickens, J. Kimble (2002)
A conserved RNA-binding protein controls germline stem cells in Caenorhabditis elegansNature, 417
Beilin Zhang, M. Gallegos, A. Puoti, E. Durkin, S. Fields, J. Kimble, M. Wickens (1997)
A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ lineNature, 390
Haibo Zhang, Jun Hu, M. Recce, B. Tian (2004)
PolyA_DB: a database for mammalian mRNA polyadenylationNucleic Acids Research, 33
(2007)
The Mixtools package: tools for mixture models
Bing Zhang, S. Kirov, J. Snoddy (2005)
WebGestalt: an integrated system for exploring gene sets in various biological contextsNucleic Acids Research, 33
Y. Murata, R. Wharton (1995)
Binding of pumilio to maternal hunchback mRNA is required for posterior patterning in drosophila embryosCell, 80
W. Majoros, Uwe Ohler (2007)
Spatial preferences of microRNA targets in 3' untranslated regionsBMC Genomics, 8
J. DeGregori, David Johnson (2006)
Distinct and Overlapping Roles for E2F Family Members in Transcription, Proliferation and Apoptosis.Current molecular medicine, 6 7
E. White, T. Moore-Jarrett, H. Ruley (2001)
PUM2, a novel murine puf protein, and its consensus RNA-binding site.RNA, 7 12
A. Gerber, S. Luschnig, M. Krasnow, P. Brown, D. Herschlag (2006)
Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster.Proceedings of the National Academy of Sciences of the United States of America, 103 12
K. Pearson
III. Contributions to the mathematical theory of evolutionProceedings of the Royal Society of London, 54
S. Nakahata, Y. Katsu, K. Mita, Kunio Inoue, Y. Nagahama, M. Yamashita (2001)
Biochemical Identification of Xenopus Pumilio as a Sequence-specific Cyclin B1 mRNA-binding Protein That Physically Interacts with a Nanos Homolog, Xcat-2, and a Cytoplasmic Polyadenylation Element-binding Protein*The Journal of Biological Chemistry, 276
B. Hook, A. Goldstrohm, Daniel Seay, M. Wickens (2007)
Two Yeast PUF Proteins Negatively Regulate a Single mRNA*Journal of Biological Chemistry, 282
S. Crittenden, C. Eckmann, Liaoteng Wang, D. Bernstein, M. Wickens, J. Kimble (2003)
Regulation of the mitosis/meiosis decision in the Caenorhabditis elegans germline.Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 358 1436
D. Spassov, R. Jurecic (2002)
Cloning and comparative sequence analysis of PUM1 and PUM2 genes, human members of the Pumilio family of RNA-binding proteins.Gene, 299 1-2
P. Zamore, J. Williamson, R. Lehmann (1997)
The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins.RNA, 3 12
Molecular and Cellular Biology – Unpaywall
Published: Apr 15, 2008
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.