T. Hagervall, T. Tuohy, J. Atkins, G. Björk (1993)
Deficiency of 1-methylguanosine in tRNA from Salmonella typhimurium induces frameshifting by quadruplet translocation.Journal of molecular biology, 232 3
(2002)
Enzymatic modification of tRNAs: MiaB is an iron-sulfur protein
A. Soma, Y. Ikeuchi, S. Kanemasa, Kazuo Kobayashi, N. Ogasawara, Tomotake Ote, Jun‐ichi Kato, Kimitsuna Watanabe, Y. Sekine, Tsutomu Suzuki (2003)
An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA.Molecular cell, 12 3
Base pairing through a bifurcated hydrogen bond between the first (C32) and the last (A38) nucleotides in the anticodon loop. A dashed line indicates a hydrogen bond
(1998)
Location and distribution of modified nucleotides in tRNA
F. Neidhardt, P. Bloch, D. Smith (1974)
Culture Medium for EnterobacteriaJournal of Bacteriology, 119
G. Björk (1980)
A novel link between the biosynthesis of aromatic amino acids and transfer RNA modification in Escherichia coli.Journal of molecular biology, 140 3
S. Cusack, A. Yaremchuk, M. Tukalo (1996)
The crystal structures of T. thermophilus lysyl‐tRNA synthetase complexed with E. coli tRNA(Lys) and a T. thermophilus tRNA(Lys) transcript: anticodon recognition and conformational changes upon binding of a lysyl‐adenylate analogue.The EMBO Journal, 15
K. Datsenko, B. Wanner (2000)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.Proceedings of the National Academy of Sciences of the United States of America, 97 12
J. Donohue (1969)
On N-H--S hydrogen bonds.Journal of molecular biology, 45 2
R. Leipuvienė, Qiang Qian, G. Björk (2004)
Formation of Thiolated Nucleosides Present in tRNA from Salmonella enterica serovar Typhimurium Occurs in Two Principally Distinct PathwaysJournal of Bacteriology, 186
H. Sofia, Guang Chen, Beth Hetzler, Jorge Reyes-Spindola, N. Miller (2001)
Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods.Nucleic acids research, 29 5
Drew Smith, Michael Yarus (1989)
tRNA-tRNA interactions within cellular ribosomes.Proceedings of the National Academy of Sciences of the United States of America, 86 12
R. Kambampati, C. Lauhon (2000)
Evidence for the Transfer of Sulfane Sulfur from IscS to ThiI during the in Vitro Biosynthesis of 4-Thiouridine inEscherichia coli tRNA*The Journal of Biological Chemistry, 275
J. Curran, M. Yarus (1989)
Rates of aminoacyl-tRNA selection at 29 sense codons in vivo.Journal of molecular biology, 209 1
J. Ericson, G. Bjork (1986)
Pleiotropic effects induced by modification deficiency next to the anticodon of tRNA from Salmonella typhimurium LT2Journal of Bacteriology, 166
A. Link, Dereth Phillips, G. Church (1997)
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterizationJournal of Bacteriology, 179
P. Palenchar, Christopher Buck, Hui-Chung Cheng, T. Larson, E. Mueller (2000)
Evidence That ThiI, an Enzyme Shared between Thiamin and 4-Thiouridine Biosynthesis, May Be a Sulfurtransferase That Proceeds through a Persulfide Intermediate*The Journal of Biological Chemistry, 275
R. Cortese, R. Landsberg, R. Haar, H. Umbarger, B. Ames (1974)
Pleiotropy of hisT mutants blocked in pseudouridine synthesis in tRNA: leucine and isoleucine-valine operons.Proceedings of the National Academy of Sciences of the United States of America, 71 5
G. Bertani (1951)
STUDIES ON LYSOGENESIS IJournal of Bacteriology, 62
(2003)
tRNA sequences and tRNA genes database. [Online] http://www.uni-bayreuth.de/departments/biochimie/sprinzl /trna
H. Malke (1981)
R. W. Davis, D. Botstein and J. R. Roth, A Manual for Genetic Engineering, Advanced Bacterial Genetics. 251 S., 15 Abb. Cold Spring Harbor 1980. Cold Spring Harbor Laboratory. $ 28.20Journal of Basic Microbiology, 21
Jaunius Urbonavičius, Qiang Qian, J. Durand, T. Hagervall, G. Björk (2001)
Improvement of reading frame maintenance is a common function for several tRNA modificationsThe EMBO Journal, 20
G. Björk (1995)
Genetic dissection of synthesis and function of modified nucleosides in bacterial transfer RNA.Progress in nucleic acid research and molecular biology, 50
(1980)
A manual for genetic engineering: advanced bacterial genetics
Jeffrey Miller (1972)
Experiments in molecular genetics
P. AJITKUMARt, J. Cherayil (1988)
Thionucleosides in transfer ribonucleic acid: diversity, structure, biosynthesis, and function.Microbiological reviews, 52 1
Charles Gehrke, K. Kuo, Roy McCune, K. Gerhardt, Paul Agris (1982)
Quantitative enzymatic hydrolysis of tRNAs: reversed-phase high-performance liquid chromatography of tRNA nucleosides.Journal of chromatography, 230 2
R. Kambampati, C. Lauhon (2003)
MnmA and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli.Biochemistry, 42 4
K. Waltersson (1979)
The crystal structure of Cs[VOF3] · 12H2OJournal of Solid State Chemistry, 28
Qiang Qian, J. Curran, G. Björk (1998)
The Methyl Group of theN6-Methyl-N6-Threonylcarbamoyladenosine in tRNA of Escherichia coli Modestly Improves the Efficiency of the tRNAJournal of Bacteriology, 180
C. Gehrke, K. Kuo (1990)
Chapter 1 Ribonucleoside Analysis by Reversed-Phase High Performance Liquid ChromatographyJournal of chromatography library, 45
S. Pomerantz, J. McCloskey (1990)
Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry.Methods in enzymology, 193
M. Rould, J. Perona, T. Steitz (1991)
Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetaseNature, 352
M. Ehrenberg, C. Kurland (1984)
Costs of accuracy determined by a maximal growth rate constraintQuarterly Reviews of Biophysics, 17
C. Lauhon (2002)
Requirement for IscS in Biosynthesis of All Thionucleosides in Escherichia coliJournal of Bacteriology, 184
F. Neidhardt, P. Bloch, S. Pedersen, S. Reeh (1977)
Chemical measurement of steady-state levels of ten aminoacyl-transfer ribonucleic acid synthetases in Escherichia coliJournal of Bacteriology, 129
S. Avital, D. Elson (1969)
A convenient procedure for preparing transfer ribonucleic acid from Escherichia coli.Biochimica et biophysica acta, 179 2
M. Ruff, S. Krishnaswamy, M. Boeglin, A. Poterszman, A. Mitschler, A. Podjarny, B. Rees, J. Thierry, D. Moras (1991)
Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp)Science, 252
S. Cusack, A. Yaremchuk, I. Krikliviy, M. Tukalo (1998)
tRNA(Pro) anticodon recognition by Thermus thermophilus prolyl-tRNA synthetase.Structure, 6 1
K. Nilsson, H. Lundgren, T. Hagervall, G. Björk (2002)
The Cysteine Desulfurase IscS Is Required for Synthesis of All Five Thiolated Nucleosides Present in tRNA from Salmonella enterica Serovar TyphimuriumJournal of Bacteriology, 184
(1990)
Chromatography and modification of nucleosides. A. Analytical methods for major and modified nucleosides
J. Curran (1995)
Decoding with the A:I wobble pair is inefficient.Nucleic acids research, 23 4
Qiang Qian, Ji-nong Li, Hong Zhao, T. Hagervall, P. Farabaugh, G. Björk (1998)
A new model for phenotypic suppression of frameshift mutations by mutant tRNAs.Molecular cell, 1 4
P. Auffinger, E. Westhof (1999)
Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes.Journal of molecular biology, 292 3
M. Singer, T. Baker, G. Schnitzler, S. Deischel, M. Goel, W. Dove, K. Jaacks, A. Grossman, J. Erickson, C. Gross (1989)
A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.Microbiological reviews, 53 1
T. Kruse, Brian Clark, M. Sprinzl (1978)
The effect of specific structural modification on the biological activity of E. coli arginine tRNA.Nucleic acids research, 5 3
V. Emilsson, C. Kurland (1990)
Growth rate dependence of transfer RNA abundance in Escherichia coli.The EMBO Journal, 9
J. McCloskey, D. Graham, S. Zhou, P. Crain, M. Ibba, J. Konisky, D. Söll, G. Olsen (2001)
Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales.Nucleic acids research, 29 22
Barry Bochneri, Michaela Savageau (1977)
Generalized indicator plate for genetic, metabolic, and taxonomic studies with microorganismsApplied and Environmental Microbiology, 33
H. Grosjean, R. Benne (1998)
Modification And Editing Of Rna
E. Westhof, P. Dumas, D. Moras (1985)
Crystallographic refinement of yeast aspartic acid transfer RNA.Journal of molecular biology, 184 1
D. Milton, R. O’Toole, P. Hörstedt, H. Wolf‐Watz (1996)
Flagellin A is essential for the virulence of Vibrio anguillarumJournal of Bacteriology, 178
B. Esberg, Glenn Björk (1995)
The methylthio group (ms2) of N6-(4-hydroxyisopentenyl)-2-methylthioadenosine (ms2io6A) present next to the anticodon contributes to the decoding efficiency of the tRNAJournal of Bacteriology, 177
U. Baumann, W. Fischer, M. Sprinzl (1985)
Analysis of modification-dependent structural alterations in the anticodon loop of Escherichia coli tRNAArg and their effects on the translation of MS2 RNA.European journal of biochemistry, 152 3
James Curran (1993)
Analysis of effects of tRNA:message stability on frameshift frequency at the Escherichia coli RF2 programmed frameshift site.Nucleic Acids Research, 21
Qiang Qian, G. Björk (1997)
Structural alterations far from the anticodon of the tRNAProGGG of Salmonella typhimurium induce +1 frameshifting at the peptidyl-site.Journal of molecular biology, 273 5
Y. Tanami (1956)
Studies on lysogenesisJapanese journal of bacteriology, 11
G. Quigley, A. Rich (1976)
Structural domains of transfer RNA molecules.Science, 194 4267
C. Gehrke, K. Kuo (1989)
Ribonucleoside analysis by reversed-phase high-performance liquid chromatography.Journal of chromatography, 471
M. Sullivan, J. Cannon, F. Webb, R. Bock (1985)
Antisuppressor mutation in Escherichia coli defective in biosynthesis of 5-methylaminomethyl-2-thiouridineJournal of Bacteriology, 161
J. Li, G. Björk (1995)
1-Methylguanosine deficiency of tRNA influences cognate codon interaction and metabolism in Salmonella typhimuriumJournal of Bacteriology, 177
H. Schmieger (2004)
Phage P22-mutants with increased or decreased transduction abilitiesMolecular and General Genetics MGG, 119
H. Vogel, D. Bonner (1956)
Acetylornithinase of Escherichia coli: partial purification and some properties.The Journal of biological chemistry, 218 1
Journal of Bacteriology – Unpaywall
Published: Jan 16, 2004
Access the full text.
Sign up today, get DeepDyve free for 14 days.