Access the full text.
Sign up today, get DeepDyve free for 14 days.
L. Riemann, F. Azam (2002)
Widespread N-Acetyl-d-Glucosamine Uptake among Pelagic Marine Bacteria and Its Ecological ImplicationsApplied and Environmental Microbiology, 68
S. Giovannoni, H. Tripp, S. Givan, M. Podar, K. Vergin, Damon Baptista, L. Bibbs, Jonathan Eads, T. Richardson, M. Noordewier, M. Rappé, J. Short, J. Carrington, E. Mathur (2005)
Genome Streamlining in a Cosmopolitan Oceanic BacteriumScience, 309
G. Gentile, L. Giuliano, G. D’Auria, F. Smedile, M. Azzaro, M. Domenico, M. Yakimov (2006)
Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing.Environmental microbiology, 8 12
N. Fisher (1992)
Decomposition and release of elements from zooplankton debrisMarine Ecology Progress Series, 88
Uncultured Verrucomicrobia bacterium SW59 (AJ575730) NAG-P2-OTU10 (AB781428)
J. Yoon, So-Jung Kang, T. Oh (2006)
Variovorax dokdonensis sp. nov., isolated from soil.International journal of systematic and evolutionary microbiology, 56 Pt 4
Ester Eckert, M. Salcher, T. Posch, Bettina Eugster, J. Pernthaler (2012)
Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom.Environmental microbiology, 14 3
N. Jørgensen, R. Stepanaukas, A. Pedersen, M. Hansen, O. Nybroe (2003)
Occurrence and degradation of peptidoglycan in aquatic environments.FEMS microbiology ecology, 46 3
M. Hahn, H. Lünsdorf, Qinglong Wu, Michael Schauer, M. Höfle, J. Boenigk, P. Stadler (2003)
Isolation of Novel Ultramicrobacteria Classified as Actinobacteria from Five Freshwater Habitats in Europe and AsiaApplied and Environmental Microbiology, 69
E. Urbach, K. Vergin, S. Giovannoni (1999)
Immunochemical Detection and Isolation of DNA from Metabolically Active BacteriaApplied and Environmental Microbiology, 65
L. Alonso-Sáez, J. Gasol (2007)
Seasonal Variations in the Contributions of Different Bacterial Groups to the Uptake of Low-Molecular-Weight Compounds in Northwestern Mediterranean Coastal WatersApplied and Environmental Microbiology, 73
A. Pernthaler, J. Pernthaler, M. Schattenhofer, R. Amann (2002)
Identification of DNA-Synthesizing Bacterial Cells in Coastal North Sea PlanktonApplied and Environmental Microbiology, 68
A. Eiler, S. Bertilsson (2007)
Flavobacteria Blooms in Four Eutrophic Lakes: Linking Population Dynamics of Freshwater Bacterioplankton to Resource AvailabilityApplied and Environmental Microbiology, 73
H. Schäfer, G. Muyzer (2001)
Denaturing gradient gel electrophoresis in marine microbial ecologyMethods in Microbiology, 30
ismej) Community shifts of actively growing bacteria after NAG addition Y Tada
K. Tang, Samantha Bickel, Claudia Dziallas, H. Grossart (2009)
Microbial activities accompanying decomposition of cladoceran and copepod carcasses under different environmental conditionsAquatic Microbial Ecology, 57
B. Campbell, Liying Yu, J. Heidelberg, D. Kirchman (2011)
Activity of abundant and rare bacteria in a coastal oceanProceedings of the National Academy of Sciences, 108
M. Hahn, V. Kasalický, J. Jezbera, U. Brandt, K. Šimek (2010)
Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus LimnohabitansInternational Journal of Systematic and Evolutionary Microbiology, 60
D. Giroldo, A. Vieira, B. Paulsen (2003)
RELATIVE INCREASE OF DEOXY SUGARS DURING MICROBIAL DEGRADATION OF AN EXTRACELLULAR POLYSACCHARIDE RELEASED BY A TROPICAL FRESHWATER THALASSIOSIRA SP. (BACILLARIOPHYCEAE) 1Journal of Phycology, 39
K. Hamasaki, R. Long, F. Azam (2004)
Individual cell growth rates of marine bacteria, measured by bromodeoxyuridine incorporationAquatic Microbial Ecology, 35
F. Warnecke, R. Sommaruga, R. Sekar, Julia Hofer, J. Pernthaler (2005)
Abundances, Identity, and Growth State of Actinobacteria in Mountain Lakes of Different UV TransparencyApplied and Environmental Microbiology, 71
G. Steward, F. Azam (1999)
Bromodeoxyuridine as an alternative to 3H-thymidine for measuring bacterial productivity in aquatic samplesAquatic Microbial Ecology, 19
Farooq Azam (1998)
Microbial Control of Oceanic Carbon Flux: The Plot ThickensScience, 280
F. Fegatella, Ju-Hyeon Lim, S. Kjelleberg, R. Cavicchioli (1998)
Implications of rRNA Operon Copy Number and Ribosome Content in the Marine Oligotrophic Ultramicrobacterium Sphingomonassp. Strain RB2256Applied and Environmental Microbiology, 64
Stefan Rösel, H. Grossart (2012)
Contrasting dynamics in activity and community composition of free-living and particle-associated bacteria in springAquatic Microbial Ecology, 66
M. Hahn, V. Kasalický, J. Jezbera, U. Brandt, J. Jezberová, K. Šimek (2010)
Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake.International journal of systematic and evolutionary microbiology, 60 Pt 6
Stuart Jones, J. Lennon (2010)
Dormancy contributes to the maintenance of microbial diversityProceedings of the National Academy of Sciences, 107
Karen Cloud-Hansen, S. Peterson, E. Stabb, W. Goldman, M. McFall-Ngai, J. Handelsman (2006)
Breaching the great wall: peptidoglycan and microbial interactionsNature Reviews Microbiology, 4
M. Allgaier, H. Grossart (2006)
Diversity and Seasonal Dynamics of Actinobacteria Populations in Four Lakes in Northeastern GermanyApplied and Environmental Microbiology, 72
N. Lee, P. Nielsen, K. Andreasen, S. Juretschko, J. Nielsen, K. Schleifer, M. Wagner (1999)
Combination of Fluorescent In Situ Hybridization and Microautoradiography—a New Tool for Structure-Function Analyses in Microbial EcologyApplied and Environmental Microbiology, 65
V. Kasalický, J. Jezbera, M. Hahn, K. Šimek (2013)
The Diversity of the Limnohabitans Genus, an Important Group of Freshwater Bacterioplankton, by Characterization of 35 Isolated StrainsPLoS ONE, 8
S. Garcia, K. McMahon, M. Martínez-García, Abhishek Srivastava, A. Sczyrba, R. Stepanauskas, H. Grossart, T. Woyke, F. Warnecke (2012)
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplanktonThe ISME Journal, 7
D. Hunt, Lawrence David, D. Gevers, S. Preheim, E. Alm, M. Polz (2008)
Resource Partitioning and Sympatric Differentiation Among Closely Related BacterioplanktonScience, 320
K. Šimek, J. Pernthaler, M. Weinbauer, K. Horňák, J. Dolan, J. Nedoma, M. Mašín, R. Amann (2001)
Changes in Bacterial Community Composition and Dynamics and Viral Mortality Rates Associated with Enhanced Flagellate Grazing in a Mesoeutrophic ReservoirApplied and Environmental Microbiology, 67
T. Thingstad (2000)
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systemsLimnology and Oceanography, 45
M. Cottrell, D. Kirchman (2000)
Natural Assemblages of Marine Proteobacteria and Members of the Cytophaga-Flavobacter Cluster Consuming Low- and High-Molecular-Weight Dissolved Organic MatterApplied and Environmental Microbiology, 66
Hendrik Schäfer, Laetitia Bernard, C. Courties, P. Lebaron, Pierre Servais, Rüdiger Pukall, E. Stackebrandt, M. Troussellier, T. Guindulain, J. Vives-Rego, Gerard Muyzer (2001)
Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations.FEMS microbiology ecology, 34 3
Xiaozhen Mou, R. Hodson, M. Moran (2007)
Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater.Environmental microbiology, 9 8
M. Salcher, J. Pernthaler, T. Posch (2010)
Spatiotemporal distribution and activity patterns of bacteria from three phylogenetic groups in an oligomesotrophic lakeLimnology and Oceanography, 55
E. Wright, L. Yilmaz, D. Noguera (2011)
DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA SequencesApplied and Environmental Microbiology, 78
North Pacific
Yuya Tada, A. Taniguchi, Ippei Nagao, T. Miki, M. Uematsu, A. Tsuda, K. Hamasaki (2011)
Differing Growth Responses of Major Phylogenetic Groups of Marine Bacteria to Natural Phytoplankton Blooms in the Western North Pacific OceanApplied and Environmental Microbiology, 77
Stuart Jones, Ryan Newton, K. McMahon (2009)
Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes.Environmental microbiology, 11 9
Qinglong Wu, M. Hahn (2006)
Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels.FEMS microbiology ecology, 57 1
M. Weinbauer, M. Höfle (1998)
Significance of Viral Lysis and Flagellate Grazing as Factors Controlling Bacterioplankton Production in a Eutrophic LakeApplied and Environmental Microbiology, 64
F. Glöckner, E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler, R. Amann (2000)
Comparative 16S rRNA Analysis of Lake Bacterioplankton Reveals Globally Distributed Phylogenetic Clusters Including an Abundant Group of ActinobacteriaApplied and Environmental Microbiology, 66
P. Kemp, S. Lee, J. LaRoche (1993)
Estimating the Growth Rate of Slowly Growing Marine Bacteria from RNA ContentApplied and Environmental Microbiology, 59
H. Miwa, I. Ahmed, Jaewoo Yoon, A. Yokota, T. Fujiwara (2008)
Variovorax boronicumulans sp. nov., a boron-accumulating bacterium isolated from soil.International journal of systematic and evolutionary microbiology, 58 Pt 1
J. Nedoma, J. Vrba, J. Hejzlar, K. Šimek, V. Straškrabová (1994)
N-acetylglucosamine dynamics in freshwater environments: Concentration of amino sugars, extracellular enzyme activities, and microbial uptakeLimnology and Oceanography, 39
M. Hahn, Matthias Pöckl, Qinglong Wu (2005)
Low Intraspecific Diversity in a Polynucleobacter Subcluster Population Numerically Dominating Bacterioplankton of a Freshwater PondApplied and Environmental Microbiology, 71
J. Pernthaler, T. Posch, K. Šimek, J. Vrba, A. Pernthaler, F. Glöckner, U. Nübel, R. Psenner, R. Amann (2001)
Predator-Specific Enrichment of Actinobacteria from a Cosmopolitan Freshwater Clade in Mixed Continuous CultureApplied and Environmental Microbiology, 67
Stefan Rösel, M. Allgaier, H. Grossart (2012)
Long-Term Characterization of Free-Living and Particle-Associated Bacterial Communities in Lake Tiefwaren Reveals Distinct Seasonal PatternsMicrobial Ecology, 64
C. Wurzbacher, H. Grossart (2012)
Improved detection and identification of aquatic fungi and chitin in aquatic environmentsMycologia, 104
C. Alonso, M. Zeder, C. Piccini, D. Conde, J. Pernthaler (2009)
Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon.Environmental microbiology, 11 4
M. Allgaier, Sarah Brückner, E. Jaspers, H. Grossart (2007)
Intra- and inter-lake variability of free-living and particle-associated Actinobacteria communities.Environmental microbiology, 9 11
U. Burkert, F. Warnecke, D. Babenzien, E. Zwirnmann, J. Pernthaler (2003)
Members of a Readily Enriched β-Proteobacterial Clade Are Common in Surface Waters of a Humic LakeApplied and Environmental Microbiology, 69
Ulrike Buck, H. Grossart, R. Amann, J. Pernthaler (2009)
Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake.Environmental microbiology, 11 7
S. Beier, S. Bertilsson (2011)
Uncoupling of chitinase activity and uptake of hydrolysis products in freshwater bacterioplanktonLimnology and Oceanography, 56
Lee Kerkhof, Paul Kemp (1999)
Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth.FEMS microbiology ecology, 30 3
Weizhong Li, A. Godzik (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesBioinformatics, 22 13
Ryan Newton, Stuart Jones, A. Eiler, K. McMahon, S. Bertilsson (2011)
A Guide to the Natural History of Freshwater Lake BacteriaMicrobiology and Molecular Biology Reviews, 75
Raphaël Lami, J. Ghiglione, Y. Desdevises, N. West, P. Lebaron (2009)
Annual patterns of presence and activity of marine bacteria monitored by 16S rDNA–16S rRNA fingerprints in the coastal NW Mediterranean SeaAquatic Microbial Ecology, 54
V Kasalický, J Jezbera, K Šimek, MW Hahn (2010)
Limnohabitans planktonicus sp. nov., and Limnohabitans parvus sp. nov., two novel planktonic Betaproteobacteria isolated from a freshwater reservoir, 60
Yonghui Zeng, V. Kasalický, K. Šimek, M. Koblížek (2012)
Genome Sequences of Two Freshwater Betaproteobacterial Isolates, Limnohabitans Species Strains Rim28 and Rim47, Indicate Their Capabilities as Both Photoautotrophs and Ammonia OxidizersJournal of Bacteriology, 194
K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, Sudhir Kumar (2011)
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.Molecular biology and evolution, 28 10
B. Campbell, Liying Yu, T. Straza, D. Kirchman (2009)
Temporal changes in bacterial rRNA and rRNA genes in Delaware (USA) coastal watersAquatic Microbial Ecology, 57
Yuya Tada, A. Taniguchi, K. Hamasaki (2010)
Phylotype-specific growth rates of marine bacteria measured by bromodeoxyuridine immunocytochemistry and fluorescence in situ hybridizationAquatic Microbial Ecology, 59
Ryan Newton, Stuart Jones, Matthew Helmus, K. McMahon (2007)
Phylogenetic Ecology of the Freshwater Actinobacteria acI LineageApplied and Environmental Microbiology, 73
D. Kirchman, E. K'nees, R. Hodson (1985)
Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systemsApplied and Environmental Microbiology, 49
Qinglong Wu, M. Hahn (2006)
High predictability of the seasonal dynamics of a species-like Polynucleobacter population in a freshwater lake.Environmental microbiology, 8 9
J. Fuhrman, F. Azam (1982)
Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: Evaluation and field resultsMarine Biology, 66
C. Alonso, J. Pernthaler (2005)
Incorporation of Glucose under Anoxic Conditions by Bacterioplankton from Coastal North Sea Surface WatersApplied and Environmental Microbiology, 71
Uncultured Bacteroidetes bacterium clone ST11-20 (DQ501331)
V. Kasalický, J. Jezbera, K. Šimek, M. Hahn (2010)
Limnohabitans planktonicus sp. nov. and Limnohabitans parvus sp. nov., planktonic betaproteobacteria isolated from a freshwater reservoir, and emended description of the genus Limnohabitans.International journal of systematic and evolutionary microbiology, 60 Pt 12
The ISME Journal – Unpaywall
Published: Aug 29, 2013
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.