Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer-journals/evolution-of-metal-hyperaccumulation-required-cis-regulatory-changes-NJijTz0slM
References (53)
-
K. Axelsen, M. Palmgren (2001)
Inventory of the superfamily of P-type ion pumps in Arabidopsis.Plant physiology, 126 2
-
Supplementary Information is linked to the online version of the paper at www.nature.com/nature -
S. Sinclair, S. Sherson, R. Jarvis, J. Camakaris, C. Cobbett (2007)
The use of the zinc-fluorophore, Zinpyr-1, in the study of zinc homeostasis in Arabidopsis roots.The New phytologist, 174 1
-
Markus Benderoth, S. Textor, Aaron Windsor, T. Mitchell-Olds, J. Gershenzon, J. Kroymann (2006)
Positive selection driving diversification in plant secondary metabolism.Proceedings of the National Academy of Sciences of the United States of America, 103 24
-
T. Mitchell-Olds (2001)
Arabidopsis thaliana and its wild relatives: a model system for ecology and evolutionTrends in Ecology and Evolution, 16
-
David Gordon, C. Abajian, P. Green (1998)
Consed: a graphical tool for sequence finishing.Genome research, 8 3
-
O. Couronne, Alexander Poliakov, Nicolas Bray, T. Ishkhanov, D. Ryaboy, E. Rubin, L. Pachter, I. Dubchak (2003)
Strategies and tools for whole-genome alignments.Genome research, 13 1
-
Michael Weber, E. Harada, C. Vess, E. Roepenack-Lahaye, S. Clemens (2004)
Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors.The Plant journal : for cell and molecular biology, 37 2
-
S. Clemens, M. Palmgren, U. Krämer (2002)
A long way ahead: understanding and engineering plant metal accumulation.Trends in plant science, 7 7
-
M. Eppinger, Claudia Baar, B. Linz, G. Raddatz, C. Lanz, Heike Keller, G. Morelli, H. Gressmann, M. Achtman, S. Schuster (2006)
Who Ate Whom? Adaptive Helicobacter Genomic Changes That Accompanied a Host Jump from Early Humans to Large FelinesPLoS Genetics, 2
-
Ute Krämer, J. Cotter-Howells, J. Charnock, A. Baker, J. Smith (1996)
Free histidine as a metal chelator in plants that accumulate nickelNature, 379
-
Sophie Chateau, R. Sangwan, B. Sangwan-Norreel (2000)
Competence of Arabidopsis thaliana genotypes and mutants for Agrobacterium tumefaciens-mediated gene transfer: role of phytohormones.Journal of experimental botany, 51 353
-
Anne-Garlonn Desbrosses-Fonrouge, Katrin Voigt, A. Schröder, Stéphanie Arrivault, S. Thomine, U. Krämer (2005)
Arabidopsis thaliana MTP1 is a Zn transporter in the vacuolar membrane which mediates Zn detoxification and drives leaf Zn accumulationFEBS Letters, 579
-
M. Courbot, Glenda Willems, P. Motte, Samuel Arvidsson, N. Roosens, P. Saumitou-Laprade, N. Verbruggen (2007)
A Major Quantitative Trait Locus for Cadmium Tolerance in Arabidopsis halleri Colocalizes with HMA4, a Gene Encoding a Heavy Metal ATPase1[OA]Plant Physiology, 144
-
Stéphanie Arrivault, Toralf Senger, U. Krämer (2006)
The Arabidopsis metal tolerance protein AtMTP3 maintains metal homeostasis by mediating Zn exclusion from the shoot under Fe deficiency and Zn oversupply.The Plant journal : for cell and molecular biology, 46 5
-
D. Weigel, M. Nordborg (2005)
Natural Variation in Arabidopsis. How Do We Find the Causal Genes?Plant Physiology, 138
-
R. Jefferson, T. Kavanagh, M. Bevan (1987)
GUS fusions: beta‐glucuronidase as a sensitive and versatile gene fusion marker in higher plants.The EMBO Journal, 6
-
Nicholas Bray, I. Dubchak, L. Pachter (2003)
AVID: A global alignment program.Genome research, 13 1
-
S. Clough, A. Bent (1998)
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 16 6
-
NA Smith (2000)
Total silencing by intron-spliced hairpin RNAsNature, 407
-
N. Terry, G. Bañuelos (1999)
Phytoremediation of Contaminated Soil and Water -
M. Koornneef, C. Alonso‐Blanco, D. Vreugdenhil (2004)
Naturally occurring genetic variation in Arabidopsis thaliana.Annual review of plant biology, 55
-
N. Smith, S. Singh, Ming-Bo Wang, P. Stoutjesdijk, A. Green, P. Waterhouse (2000)
Gene expression: Total silencing by intron-spliced hairpin RNAsNature, 407
-
T. Murashige, F. Skoog (1962)
A revised medium for rapid growth and bio assays with tobacco tissue culturesPhysiologia Plantarum, 15
-
H. Hoekstra, J. Coyne (2007)
THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION, 61
-
Philip Brewer, M. Heisler, J. Hejátko, J. Friml, E. Benková (2006)
In situ hybridization for mRNA detection in Arabidopsis tissue sectionsNature Protocols, 1
-
Glenda Willems, D. Dräger, M. Courbot, C. Godé, N. Verbruggen, P. Saumitou-Laprade (2007)
The Genetic Basis of Zinc Tolerance in the Metallophyte Arabidopsis halleri ssp. halleri (Brassicaceae): An Analysis of Quantitative Trait LociGenetics, 176
-
D. Schubert, Berthold Lechtenberg, A. Forsbach, Mario Gils, S. Bahadur, R. Schmidt (2004)
Silencing in Arabidopsis T-DNA Transformants: The Predominant Role of a Gene-Specific RNA Sensing Mechanism versus Position EffectsThe Plant Cell Online, 16
-
M. Courbot, Glenda Willems, P. Motte, Samuel Arvidsson, P. Saumitou-Laprade, N. Verbruggen (2006)
A major QTL for Cd tolerance in Arabidopsis halleri co-localizes with HMA4, a gene encoding a heavy metal ATPase -
Valérie Bert, P. Meerts, P. Saumitou-Laprade, P. Salis, W. Gruber, N. Verbruggen (2003)
Genetic basis of Cd tolerance and hyperaccumulation in Arabidopsis halleriPlant and Soil, 249
-
H. Weber, Aurore Chételat, P. Reymond, E. Farmer (2004)
Selective and powerful stress gene expression in Arabidopsis in response to malondialdehyde.The Plant journal : for cell and molecular biology, 37 6
-
After counterstaining with 0.5% (w/v) Calcofluor, slides were mounted with Entellan (Merck, Germany) and observed with a Leica microscope equipped with a digital camera -
N. Grotz, T. Fox, E. Connolly, Walter Park, M. Guerinot, D. Eide (1998)
Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency.Proceedings of the National Academy of Sciences of the United States of America, 95 12
-
Aaron Windsor, M. Schranz, Nataša Formanová, Steffi Gebauer-Jung, John Bishop, Domenica Schnabelrauch, J. Kroymann, T. Mitchell-Olds (2006)
Partial Shotgun Sequencing of the Boechera stricta Genome Reveals Extensive Microsynteny and Promoter Conservation with Arabidopsis1[W]Plant Physiology, 140
-
D. Hussain, Michael Haydon, Yuwen Wang, E. Wong, S. Sherson, J. Young, J. Camakaris, J. Harper, C. Cobbett (2004)
P-Type ATPase Heavy Metal Transporters with Roles in Essential Zinc Homeostasis in ArabidopsisThe Plant Cell Online, 16
-
S. Zhong, A. Khodursky, D. Dykhuizen, A. Dean (2004)
Evolutionary genomics of ecological specialization.Proceedings of the National Academy of Sciences of the United States of America, 101 32
-
Richard Clark, Tina Wagler, P. Quijada, J. Doebley (2006)
A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architectureNature Genetics, 38
-
SUPPLEMENTARY NOTES Supplementary references. Further references are listed in the printed paper -
(2008)
doi:10.1038/nature06877 -
M. Curtis, U. Grossniklaus (2003)
A Gateway Cloning Vector Set for High-Throughput Functional Analysis of Genes in Planta[w]Plant Physiology, 133
-
M. Macnair, Valérie Bert, Valérie Bert, S. Huitson, P. Saumitou-Laprade, Daniel Petit (1999)
Zinc tolerance and hyperaccumulation are genetically independent charactersProceedings of the Royal Society of London. Series B: Biological Sciences, 266
-
D. Dräger, Anne-Garlonn Desbrosses-Fonrouge, C. Krach, A. Chardonnens, R. Meyer, P. Saumitou-Laprade, U. Krämer (2004)
Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels.The Plant journal : for cell and molecular biology, 39 3
-
Dirk Walther, Gabor Bartha, M. Morris (2001)
Basecalling with LifeTrace.Genome research, 11 5
-
G. Vancanneyt, R. Schmidt, A. O’Connor-Sánchez, L. Willmitzer, M. Rocha-Sosa (2004)
Construction of an intron-containing marker gene: Splicing of the intron in transgenic plants and its use in monitoring early events in Agrobacterium-mediated plant transformationMolecular and General Genetics MGG, 220
-
H. Küpper, E. Lombi, F. Zhao, S. McGrath (2000)
Cellular compartmentation of cadmium and zinc in relation to other elements in the hyperaccumulator Arabidopsis halleriPlanta, 212
-
R. Sugino, H. Innan (2006)
Selection for more of the same product as a force to enhance concerted evolution of duplicated genes.Trends in genetics : TIG, 22 12
-
I. Talke, M. Hanikenne, U. Krämer (2006)
Zinc-Dependent Global Transcriptional Control, Transcriptional Deregulation, and Higher Gene Copy Number for Genes in Metal Homeostasis of the Hyperaccumulator Arabidopsis halleri1[W]Plant Physiology, 142
-
M. Lasat, Nicole Pence, D. Garvin, S. Ebbs, L. Kochian (2000)
Molecular physiology of zinc transport in the Zn hyperaccumulator Thlaspi caerulescens.Journal of experimental botany, 51 342
-
Frédéric Verret, A. Gravot, P. Auroy, N. Leonhardt, Pascale David, L. Nussaume, Alain Vavasseur, P. Richaud (2004)
Overexpression of AtHMA4 enhances root‐to‐shoot translocation of zinc and cadmium and plant metal toleranceFEBS Letters, 576
-
J. Beckmann, X. Estivill, S. Antonarakis (2007)
Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variabilityNature Reviews Genetics, 8
-
D. Thomson, R. Henry (1995)
Single-step protocol for preparation of plant tissue for analysis by PCR.BioTechniques, 19 3
-
Martina Becher, I. Talke, L. Krall, U. Krämer (2004)
Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri.The Plant journal : for cell and molecular biology, 37 2
-
T Mitchell-Olds (2001)
Arabidopsis thaliana and its wild relativesTrends Ecol. Evol., 16
- Publisher
- Springer Journals
- Copyright
- Copyright © 2008 by Nature Publishing Group
- Subject
- Science, Humanities and Social Sciences, multidisciplinary; Science, Humanities and Social Sciences, multidisciplinary; Science, multidisciplinary
- ISSN
- 0028-0836
- eISSN
- 1476-4687
- DOI
- 10.1038/nature06877
- Publisher site
- See Article on Publisher Site
Abstract
Strains of the model plant Arabidopsis vary in their ability to thrive in heavy-metal environments, presumably due to adaptations throughout evolution. Hanikenne et al. demonstrate that the strain A. halleri has accumulated multiple copies of the gene HMA4 and changes to the regulatory elements for these genes enable A. halleri to survive in extreme conditions. Their results should be useful in bioremediation for metal-contaminated soils.
Journal
Nature – Springer Journals
Published: Apr 20, 2008