Access the full text.
Sign up today, get DeepDyve free for 14 days.
James Hazzard, T. Südhof, J. Rizo (1999)
NMR analysis of the structure of synaptobrevin and of its interaction with syntaxinJournal of Biomolecular NMR, 14
S. Yoo (1995)
pH- and Ca(2+)-induced conformational change and aggregation of chromogranin B. Comparison with chromogranin A and implication in secretory vesicle biogenesis.The Journal of biological chemistry, 270 21
M. Nakano, K. Kasai, K. Yoshida, T. Tanimoto, Y. Tamaki, T. Tobita (1989)
Conformation of the fowl protamine, galline, and its binding properties to DNA.Journal of biochemistry, 105 1
Karen House-Pompeo, Yun Xu, D. Joh, P. Speziale, M. Höök (1996)
Conformational Changes in the Fibronectin Binding MSCRAMMs Are Induced by Ligand Binding (*)The Journal of Biological Chemistry, 271
Dunker (1998)
473Pac Symp Biocomput, 3
A. Alexandrescu, C. Abeygunawardana, D. Shortle (1994)
Structure and dynamics of a denatured 131-residue fragment of staphylococcal nuclease: a heteronuclear NMR study.Biochemistry, 33 5
Gary Daughdrill, Linda Hanely, F. Dahlquist (1998)
The C-terminal half of the anti-sigma factor FlgM contains a dynamic equilibrium solution structure favoring helical conformations.Biochemistry, 37 4
Tanja Lisse, Dorothea Bartels, H. Kalbitzer, Rainer Jaenicke (1996)
The recombinant dehydrin-like desiccation stress protein from the resurrection plant Craterostigma plantagineum displays no defined three-dimensional structure in its native state.Biological chemistry, 377 9
A. Lynn, S. Chandra, P. Malhotra, Virander Chauhan (1999)
Heme binding and polymerization by Plasmodium falciparum histidine rich protein II: influence of pH on activity and conformationFEBS Letters, 459
E. Josefsson, D. O’Connell, T. Foster, I. Durussel, J. Cox (1998)
The Binding of Calcium to the B-repeat Segment of SdrD, a Cell Surface Protein of Staphylococcus aureus *The Journal of Biological Chemistry, 273
I. Baskakov, Raj Kumar, G. Srinivasan, Yanqin Ji, D. Bolen, E. Thompson (1999)
Trimethylamine N-Oxide-induced Cooperative Folding of an Intrinsically Unfolded Transcription-activating Fragment of Human Glucocorticoid Receptor*The Journal of Biological Chemistry, 274
M. Hernández, J. Ávila, J. Andreu (1986)
Physicochemical characterization of the heat-stable microtubule-associated protein MAP2.European journal of biochemistry, 154 1
P. Romero, Z. Obradovic, Dunker Ak (1999)
Folding minimal sequences: the lower bound for sequence complexity of globular proteinsFEBS Letters, 462
I. Bogdarina, D. Fox, G. Kneale (1998)
Equilibrium and kinetic binding analysis of the N-terminal domain of the Pf1 gene 5 protein and its interaction with single-stranded DNA.Journal of molecular biology, 275 3
Y. Goto, N. Takahashi, A. Fink (1990)
Mechanism of acid-induced folding of proteins.Biochemistry, 29 14
D. Donne, J. Viles, D. Groth, I. Mehlhorn, T. James, F. Cohen, S. Prusiner, P. Wright, H. Dyson (1997)
Structure of the recombinant full-length hamster prion protein PrP(29-231): the N terminus is highly flexible.Proceedings of the National Academy of Sciences of the United States of America, 94 25
Gatewood (1990)
20667J Biol Chem, 265
Uversky (1998)
420Biochemistry (Moscow), 63
P. Cary, Deborah King, C. Crane-Robinson, E. Bradbury, A. Rabbani, G. Goodwin, E. Johns (2005)
Structural studies on two high-mobility-group proteins from calf thymus, HMG-14 and HMG-20 (ubiquitin), and their interaction with DNA.European journal of biochemistry, 112 3
Yoo (1990)
14414J Biol Chem, 265
J. Richards, H. Bächinger, R. Goodman, R. Brennan (1996)
Analysis of the Structural Properties of cAMP-responsive Element-binding Protein (CREB) and Phosphorylated CREB*The Journal of Biological Chemistry, 271
L. Belmont, T. Mitchison (1996)
Identification of a Protein That Interacts with Tubulin Dimers and Increases the Catastrophe Rate of MicrotubulesCell, 84
Zhaoping He, A. Dunker, C. Wesson, William Trumble (1993)
Ca(2+)-induced folding and aggregation of skeletal muscle sarcoplasmic reticulum calsequestrin. The involvement of the trifluoperazine-binding site.The Journal of biological chemistry, 268 33
Schweers (1994)
24290J Biol Chem, 269
E. Stellwagen, R. Rysavý, G. Babul (1972)
The conformation of horse heart apocytochrome c.The Journal of biological chemistry, 247 24
R. Larsen, Jinsheng Yang, S. Hou, M. Helms, D. Jameson, Maqsudul Alam (1999)
Spectroscopic Characterization of Two Soluble Transducers from the Archaeon Halobacterium salinarumJournal of Protein Chemistry, 18
Hemmings (1984)
99J Biol Chem, 4
William Lynch, Victoria, M., Riseman, Anthony Bretscher (1987)
Smooth muscle caldesmon is an extended flexible monomeric protein in solution that can readily undergo reversible intra- and intermolecular sulfhydryl cross-linking. A mechanism for caldesmon's F-actin bundling activity.The Journal of biological chemistry, 262 15
(1981)
Absorption and circular dichroism spectra of individual proteins from Escherichia coli ribosomes. Pushchino: AS USSR, Biological Research Center, Institute of Protein Research
P. Wright, H. Dyson (1999)
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.Journal of molecular biology, 293 2
J. Eom, W. Baker, A. Kintanar, E. Wurtele (1996)
The embryo-specific EMB-1 protein of Daucus carota is flexible and unstructured in solution☆Plant Science, 115
R. Loomis, E. Bergey, M. Levine, L. Tabak (2009)
Circular dichroism and fluorescence spectroscopic analyses of a proline-rich glycoprotein from human parotid saliva.International journal of peptide and protein research, 26 6
S. Yoo, J. Albanesi (1990)
Ca2(+)-induced conformational change and aggregation of chromogranin A.The Journal of biological chemistry, 265 24
C. Penkett, C. Redfield, J. Jones, I. Dodd, J. Hubbard, R. Smith, L. Smith, C. Dobson (1998)
Structural and dynamical characterization of a biologically active unfolded fibronectin-binding protein from Staphylococcus aureus.Biochemistry, 37 48
V. Uversky, Narizhneva Nv (1998)
Effect of natural ligands on the structural properties and conformational stability of proteins.Biochemistry. Biokhimiia, 63 4
R. Hudgins, P. Silveston, Liu Chengyue (1985)
Modelling of non-stationary ammonia synthesis kinetics over an iron catalyst. II: Modelling results of forced feed composition in periodic operation and for step-changesCanadian Journal of Chemical Engineering, 63
(1999)
Biophysical characterization of HMG-1 box domain of the lymphoid enhancer binding factor-1
R. Warrant, Sung-Hou Kim (1978)
α-Helix–double helix interaction shown in the structure of a protamine-transfer RNA complex and a nucleoprotamine modelNature, 271
L. Donaldson, J. Capone (1992)
Purification and characterization of the carboxyl-terminal transactivation domain of Vmw65 from herpes simplex virus type 1.The Journal of biological chemistry, 267 3
G. Pahel, A. Aulabaugh, S. Short, J. Barnes, G. Painter, P. Ray, W. Phelps (1993)
Structural and functional characterization of the HPV16 E7 protein expressed in bacteria.The Journal of biological chemistry, 268 34
Dingjiang Liu, R. Ishima, K. Tong, S. Bagby, T. Kokubo, D. Muhandiram, L. Kay, Y. Nakatani, M. Ikura (1998)
Solution Structure of a TBP–TAFII230 Complex Protein Mimicry of the Minor Groove Surface of the TATA Box Unwound by TBPCell, 94
E. Kanaya, S. Kanaya (1995)
Reconstitution of Escherichia coli RNase HI from the N-fragment with High Helicity and the C-fragment with a Disordered Structure (*)The Journal of Biological Chemistry, 270
H. Hemmings, A. Nairn, D. Aswad, P. Greengard (1984)
DARPP-32, a dopamine- and adenosine 3':5'-monophosphate-regulated phosphoprotein enriched in dopamine-innervated brain regions. II. Purification and characterization of the phosphoprotein from bovine caudate nucleus, 4
Dunker Ak, Ethan Garner, S. Guilliot, P. Romero, K. Albrecht, J. Hart, Z. Obradovic, C. Kissinger, J. Villafranca (1998)
Protein disorder and the evolution of molecular recognition: theory, predictions and observations.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
J. Wootton (1994)
Non-globular Domains in Protein Sequences: Automated Segmentation Using Complexity MeasuresComputers & chemistry, 18 3
G. Nimmo, P. Cohen (1978)
The regulation of glycogen metabolism. Purification and characterisation of protein phosphatase inhibitor-1 from rabbit skeletal muscle.European journal of biochemistry, 87 2
S. Nakajo, K. Omata, T. Aiuchi, T. Shibayama, I. Okahashi, H. Ochiai, Y. Nakai, K. Nakaya, Yasuharu Nakamura (1990)
Purification and Characterization of a Novel Brain‐Specific 14‐kDa ProteinJournal of Neurochemistry, 55
P. Romero, Z. Obradovic, C. Kissinger, J. Villafranca, Ethan Garner, S. Guilliot, A. Dunker (1998)
Thousands of proteins likely to have long disordered regions.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
E. Polverini, A. Fasano, F. Zito, P. Riccio, P. Cavatorta (1999)
Conformation of bovine myelin basic protein purified with bound lipidsEuropean Biophysics Journal, 28
L. Stewart, G. Ireton, L. Parker, K. Madden, J. Champoux (1996)
Biochemical and Biophysical Analyses of Recombinant Forms of Human Topoisomerase I (*)The Journal of Biological Chemistry, 271
Michael Weiss, T. Ellenberger, C. Wobbe, Jonathan Lee, Stephen Harrison, K. Struhl (1990)
Folding transition in the DMA-binding domain of GCN4 on specific binding to DNANature, 347
A. Fink, L. Calciano, Y. Goto, Takuzo Kurotsu, D. Palleros (1994)
Classification of acid denaturation of proteins: intermediates and unfolded states.Biochemistry, 33 41
A. Bairoch, R. Apweiler (1999)
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999Nucleic acids research, 27 1
Romero (1998)
437Pac Symp Biocomput, 3
R. Kriwacki, L. Hengst, L. Tennant, S. Reed, P. Wright (1996)
Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity.Proceedings of the National Academy of Sciences of the United States of America, 93 21
J. Gatewood, G. Schroth, C. Schmid, E. Bradbury (1990)
Zinc-induced secondary structure transitions in human sperm protamines.The Journal of biological chemistry, 265 33
V. Uversky, J. Gillespie, I. Millett, A. Khodyakova, R. Vasilenko, A. Vasiliev, Igor Rodionov, G. Kozlovskaya, D. Dolgikh, Anthony Fink, S. Doniach, E. Permyakov, V. Abramov (2000)
Zn2+-Mediated Structure Formation and Compaction of the “Natively Unfolded” Human Prothymosin αBiochemical and Biophysical Research Communications, 267
R. Appel, A. Bairoch, D. Hochstrasser (1994)
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.Trends in biochemical sciences, 19 6
H. Berkovits, J. Berg (1999)
Metal and DNA binding properties of a two-domain fragment of neural zinc finger factor 1, a CCHC-type zinc binding protein.Biochemistry, 38 51
Barry Abercrombie, Geoffrey Kneale, Colyn Crane-Robinson, E. Bradbury, Graham Goodwin, John Walker, Ernest Johns (1978)
Studies on the conformational properties of the high-mobility-group chromosomal protein HMG 17 and its interaction with DNA.European journal of biochemistry, 84 1
G. Nimmo, P. Cohen (1978)
The Regulation of Glycogen MetaabolismFEBS Journal, 87
Stellwagen (1972)
8074J Biol Chem, 247
K. Willis (2009)
Interaction with model membrane systems induces secondary structure in amino-terminal fragments of parathyroid hormone related protein.International journal of peptide and protein research, 43 1
N. Lydakis-Simantiris, S. Betts, C. Yocum (1999)
Leucine 245 is a critical residue for folding and function of the manganese stabilizing protein of photosystem II.Biochemistry, 38 47
C. Penkett, Christina Redfield, Ian Dodd, Julia Hubbard, Diane McBay, Danuta Mossakowska, Richard Smith, Christopher Dobson, Lorna Smith (1997)
NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein.Journal of molecular biology, 274 2
G. Ratnaswamy, E. Koepf, H. Bekele, H. Yin, J. Kelly (1999)
The amyloidogenicity of gelsolin is controlled by proteolysis and pH.Chemistry & biology, 6 5
B. Agianian, K. Leonard, E. Bonte, H. Zandt, P. Becker, P. Tucker (1999)
The glutamine-rich domain of the Drosophila GAGA factor is necessary for amyloid fibre formation in vitro, but not for chromatin remodelling.Journal of molecular biology, 285 2
Lisse (1996)
555Biol Chem, 377
L. Rice, P. Brennwald, A. Brünger (1997)
Formation of a yeast SNARE complex is accompanied by significant structural changesFEBS Letters, 415
Ho Cho, Corey Liu, F. Damberger, J. Pelton, H. Nelson, D. Wemmer (1996)
Yeast heat shock transcription factor N‐terminal activation domains are unstructured as probed by heteronuclear NMR spectroscopyProtein Science, 5
C. Fletcher, Abigail McGuire, A. Gingras, Hanjun Li, Hiroshi Matsuo, Nahum Sonenberg, Gerhard Wagner (1998)
4E binding proteins inhibit the translation factor eIF4E without folded structure.Biochemistry, 37 1
Donna Isbell, Shan Du, Alan Schroering, Giovanna Colombo, J. Shelling (1993)
Metal ion binding to dog osteocalcin studied by 1H NMR spectroscopy.Biochemistry, 32 42
A. Bairoch, R. Apweiler (1997)
The SWISS-PROT protein sequence data bank and its supplement TrEMBLNucleic acids research, 25 1
A. Otto, R. Seckler (1991)
Characterization, stability and refolding of recombinant hirudin.European journal of biochemistry, 202 1
P. Weinreb, Weiguo Zhen, Anna Poon, K. Conway, P. Lansbury (1996)
NACP, a protein implicated in Alzheimer's disease and learning, is natively unfolded.Biochemistry, 35 43
G. Tell, L. Perrone, D. Fabbro, L. Pellizzari, C. Pucillo, M. Felice, R. Acquaviva, S. Formisano, G. Damante (1998)
Structural and functional properties of the N transcriptional activation domain of thyroid transcription factor-1: similarities with the acidic activation domains.The Biochemical journal, 329 ( Pt 2)
C. Anfinsen, E. Haber, M. Sela, F. White (1961)
The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain.Proceedings of the National Academy of Sciences of the United States of America, 47
J. Kyte, R. Doolittle (1982)
A simple method for displaying the hydropathic character of a protein.Journal of molecular biology, 157 1
(1999)
Molecular chaperone-like properties of an unfolded protein, alpha(s)-casein
E. Tarcsa, E. Candi, T. Kartasova, W. Idler, L. Marekov, P. Steinert (1998)
Structural and Transglutaminase Substrate Properties of the Small Proline-rich 2 Family of Cornified Cell Envelope Proteins*The Journal of Biological Chemistry, 273
G. Ferrières, C. Calzolari, J. Mani, D. Laune, S. Trinquier, M. Laprade, C. Larue, B. Pau, C. Granier (1998)
Human cardiac troponin I: precise identification of antigenic epitopes and prediction of secondary structure.Clinical chemistry, 44 3
Matthias Geyer, C. Munte, Jacqueline Schorr, Roland Kellner, H. Kalbitzer (1999)
Structure of the anchor-domain of myristoylated and non-myristoylated HIV-1 Nef protein.Journal of molecular biology, 289 1
Ju-Fang Chang, Kathryn Phillips, Thomas Lundbäck, Matthias Gstaiger, John Ladbury, Ben Luisi (1999)
Oct-1 POU and octamer DNA co-operate to recognise the Bob-1 transcription co-activator via induced folding.Journal of molecular biology, 288 5
M. Horiuchi, Y. Kurihara, M. Katahira, T. Maeda, T. Saito, S. Uesugi (1997)
Dimerization and DNA binding facilitate alpha-helix formation of Max in solution.Journal of biochemistry, 122 4
P. Cary, C. Crane-Robinson, E. Bradbury, G. Dixon (1981)
Structural studies of the non-histone chromosomal proteins HMG-T and H6 from trout testis.European journal of biochemistry, 119 3
O. Schweers, Ernst Schonbrunn-Hanebeck, Alexander Man, Eckhard MandelkowS (1994)
Structural studies of tau protein and Alzheimer paired helical filaments show no evidence for beta-structure.The Journal of biological chemistry, 269 39
M. Jiménez, J. Evangelio, C. Aranda, A. López-Brauet, D. Andreu, M. Rico, R. Lagos, J. Andreu, O. Monasterio (1999)
Helicity of α(404–451) and β(394–445) tubulin C‐terminal recombinant peptidesProtein Science, 8
D. Aswad, P. Greengard (1981)
A specific substrate from rabbit cerebellum for guanosine 3':5'-monophosphate-dependent protein kinase. I. Purification and characterization.The Journal of biological chemistry, 256 7
P. Hershey, S. McWhirter, J. Gross, G. Wagner, T. Alber, A. Sachs (1999)
The Cap-binding Protein eIF4E Promotes Folding of a Functional Domain of Yeast Translation Initiation Factor eIF4G1*The Journal of Biological Chemistry, 274
K. Fiebig, L. Rice, E. Pollock, A. Brunger (1999)
Folding intermediates of SNARE complex assemblyNature Structural Biology, 6
J. Engel, W. Taylor, M. Paulsson, H. Sage, B. Hogan (1987)
Calcium binding domains and calcium-induced conformational transition of SPARC/BM-40/osteonectin, an extracellular glycoprotein expressed in mineralized and nonmineralized tissues.Biochemistry, 26 22
I. Baskakov, D. Bolen (1998)
Forcing Thermodynamically Unfolded Proteins to Fold*The Journal of Biological Chemistry, 273
Ronglan Zheng, T. Jenkins, R. Craigie (1996)
Zinc folds the N-terminal domain of HIV-1 integrase, promotes multimerization, and enhances catalytic activity.Proceedings of the National Academy of Sciences of the United States of America, 93 24
D. Timm, P. Vissavajjhala, A. Ross, K. Neet (1992)
Spectroscopic and chemical studies of the interaction between nerve growth factor (NGF) and the extracellular domain of the low affinity NGF receptorProtein Science, 1
J. Thomas, S. Patten, P. Howard, K. Day, R. Mitchell, T. Sosnick, J. Trewhella, D. Walsh, R. Maurer (1991)
Expression in Escherichia coli and characterization of the heat-stable inhibitor of the cAMP-dependent protein kinase.The Journal of biological chemistry, 266 17
J. Mogridge, Pascale Legault, Joyce Li, Mark Oene, Lewis Kay, Jack Greenblatt (1998)
Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage lambda N protein.Molecular cell, 1 2
W. Mccubbin, C. Kay (1985)
Trypsin digestion of bovine cardiac troponin C in the presence and absence of calcium.Canadian journal of biochemistry and cell biology = Revue canadienne de biochimie et biologie cellulaire, 63 8
Tuta Tarkka, J. Oikarinen, T. Grundström (1997)
Nucleotide and calcium‐induced conformational changes in histone H1FEBS Letters, 406
K. Gast, H. Damaschun, K. Eckert, K. Schulze-Forster, H. Maurer, Marlies Mueller‐Frohne, D. Zirwer, J. Czarnecki, G. Damaschun (1995)
Prothymosin alpha: a biologically active protein with random coil conformation.Biochemistry, 34 40
“Natively unfolded” proteins occupy a unique niche within the protein kingdom in that they lack ordered structure under conditions of neutral pH in vitro. Analysis of amino acid sequences, based on the normalized net charge and mean hydrophobicity, has been applied to two sets of proteins: small globular folded proteins and “natively unfolded” ones. The results show that “natively unfolded” proteins are specifically localized within a unique region of charge‐hydrophobicity phase space and indicate that a combination of low overall hydrophobicity and large net charge represent a unique structural feature of “natively unfolded” proteins. Proteins 2000;41:415–427. © 2000 Wiley‐Liss, Inc.
Proteins: Structure Function and Bioinformatics – Wiley
Published: Jan 15, 2000
Keywords: ; ; ;
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.