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References (34)
-
L. Martens, H. Hermjakob (2007)
Proteomics data validation: why all must provide data.Molecular bioSystems, 3 8
-
P. Mallick, M. Schirle, Sharon Chen, M. Flory, Hookeun Lee, Daniel Martin, J. Ranish, B. Raught, R. Schmitt, Thilo Werner, B. Kuster, R. Aebersold (2007)
Computational prediction of proteotypic peptides for quantitative proteomicsNature Biotechnology, 25
-
D. Licatalosi, R. Darnell (2006)
Splicing Regulation in Neurologic DiseaseNeuron, 52
-
Chris Taylor, N. Paton, K. Lilley, P. Binz, R. Julian, A. Jones, Weimin Zhu, R. Apweiler, R. Aebersold, E. Deutsch, M. Dunn, A. Heck, A. Leitner, M. Macht, M. Mann, L. Martens, T. Neubert, S. Patterson, P. Ping, S. Seymour, P. Souda, A. Tsugita, J. Vandekerckhove, T. Vondriska, J. Whitelegge, M. Wilkins, I. Xenarios, J. Yates, H. Hermjakob (2007)
The minimum information about a proteomics experiment (MIAPE)Nature Biotechnology, 25
-
M. Wilkins, R. Appel, J. Eyk, Maxey Chung, A. Görg, M. Hecker, L. Huber, H. Langen, A. Link, Y. Paik, S. Patterson, S. Pennington, T. Rabilloud, R. Simpson, W. Weiss, M. Dunn (2009)
Guidelines for the next 10 years of proteomicsPROTEOMICS, 6
-
F. Berven, K. Flikka, M. Berle, C. Vedeler, R. Ulvik (2006)
Proteomic-based biomarker discovery with emphasis on cerebrospinal fluid and multiple sclerosis.Current pharmaceutical biotechnology, 7 3
-
Esteban Meneses, O. Rodríguez-Rojas (1986)
ExperimentsActa Ophthalmologica, 64
-
Anthony Calabria, E. Shusta (2006)
Blood-brain barrier genomics and proteomics: elucidating phenotype, identifying disease targets and enabling brain drug delivery.Drug discovery today, 11 17-18
-
T. Schulenborg, O. Schmidt, A. Hall, H. Meyer, M. Hamacher, K. Marcus (2006)
Proteomics in neurodegeneration – disease driven approachesJournal of Neural Transmission, 113
-
A. Schmidt, R. Aebersold (2006)
High-accuracy proteome maps of human body fluidsGenome Biology, 7
-
A. Nesvizhskii, Andrew Keller, E. Kolker, R. Aebersold (2003)
A statistical model for identifying proteins by tandem mass spectrometry.Analytical chemistry, 75 17
-
A. Papassotiropoulos, M. Fountoulakis, T. Dunckley, D. Stephan, E. Reiman (2006)
Genetics, transcriptomics, and proteomics of Alzheimer's disease.The Journal of clinical psychiatry, 67 4
-
S. Carr, R. Aebersold, M. Baldwin, A. Burlingame, K. Clauser, A. Nesvizhskii (2004)
The Need for Guidelines in Publication of Peptide and Protein Identification DataMolecular & Cellular Proteomics, 3
-
M. Tress, P. Martelli, A. Frankish, Gabrielle Reeves, J. Wesselink, C. Yeats, P. Olason, M. Albrecht, H. Hegyi, A. Giorgetti, D. Raimondo, Julien Lagarde, R. Laskowski, Gonzalo López, M. Sadowski, J. Watson, P. Fariselli, I. Rossi, A. Nagy, Wang Kai, Zenia Størling, M. Orsini, Y. Assenov, H. Blankenburg, Carola Huthmacher, Fidel Ramírez, A. Schlicker, F. Denoeud, Philip Jones, Samuel Kerrien, S. Orchard, S. Antonarakis, A. Reymond, E. Birney, S. Brunak, R. Casadio, R. Guigó, J. Harrow, H. Hermjakob, David Jones, Thomas Lengauer, Christine Orengo, L. Patthy, J. Thornton, A. Tramontano, A. Valencia (2007)
The implications of alternative splicing in the ENCODE protein complementProceedings of the National Academy of Sciences, 104
-
L. Martens, Michael Müller, C. Stephan, M. Hamacher, K. Reidegeld, H. Meyer, M. Blüggel, J. Vandekerckhove, K. Gevaert, R. Apweiler (2006)
A comparison of the HUPO Brain Proteome Project pilot with other proteomics studiesPROTEOMICS, 6
-
C. Stephan, K. Reidegeld, M. Hamacher, A. Hall, K. Marcus, Chris Taylor, Philip Jones, Michael Müller, R. Apweiler, L. Martens, G. Körting, D. Chamrad, H. Thiele, M. Blüggel, David Parkinson, P. Binz, A. Lyall, H. Meyer (2006)
Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phasePROTEOMICS, 6
-
(2005)
Interpretation of shotgun proteomic data: The protein inference problem -
S. Lovestone, A. Güntert, Abdul Hye, S. Lynham, M. Thambisetty, M. Ward (2007)
Proteomics of Alzheimer’s disease: understanding mechanisms and seeking biomarkersExpert Review of Proteomics, 4
-
Sheng Pan, David Zhu, J. Quinn, E. Peskind, T. Montine, B. Lin, D. Goodlett, Greg Taylor, J. Eng, Jing Zhang (2007)
A combined dataset of human cerebrospinal fluid proteins identified by multi‐dimensional chromatography and tandem mass spectrometryPROTEOMICS, 7
-
Martin Romeo, V. Espina, M. Lowenthal, B. Espina, Emanuel III, L. Liotta (2005)
CSF proteome: a protein repository for potential biomarker identificationExpert Review of Proteomics, 2
-
M. Hamacher, R. Apweiler, G. Arnold, A. Becker, M. Blüggel, O. Carrette, C. Colvis, M. Dunn, T. Fröhlich, M. Fountoulakis, A. Hall, F. Herberg, Juango Ji, Hans Kretzschmar, P. Lewczuk, G. Lubec, K. Marcus, L. Martens, Nadine Bustamante, Y. Park, S. Pennington, J. Robben, K. Stühler, K. Reidegeld, P. Riederer, J. Rossier, Jean-Charles Sanchez, Michael Schrader, C. Stephan, D. Tagle, H. Thiele, Jing Wang, J. Wiltfang, J. Yoo, Cheng-gang Zhang, J. Klose, H. Meyer (2006)
HUPO Brain Proteome Project: Summary of the pilot phase and introduction of a comprehensive data reprocessing strategyPROTEOMICS, 6
-
A. Andreadis (2006)
Misregulation of tau alternative splicing in neurodegeneration and dementia.Progress in molecular and subcellular biology, 44
-
K. Reidegeld, Michael Müller, C. Stephan, M. Blüggel, M. Hamacher, L. Martens, G. Körting, D. Chamrad, David Parkinson, R. Apweiler, H. Meyer, K. Marcus (2006)
The power of cooperative investigation: Summary and comparison of the HUPO Brain Proteome Project pilot study resultsPROTEOMICS, 6
-
(2007)
Compete, collaborate, compel, 39
-
(2007)
Editors -
Mark Johnson, Li-Rong Yu, T. Conrads, Y. Kinoshita, T. Uo, J. McBee, T. Veenstra, R. Morrison (2005)
The Proteomics of NeurodegenerationAmerican Journal of Pharmacogenomics, 5
-
P. Kersey, Jorge Duarte, Allyson Williams, Youla Karavidopoulou, E. Birney, R. Apweiler (2004)
The International Protein Index: An integrated database for proteomics experimentsPROTEOMICS, 4
-
A. Su, T. Wiltshire, S. Batalov, H. Lapp, K. Ching, David Block, Jie Zhang, R. Soden, M. Hayakawa, Gabriel Kreiman, M. Cooke, J. Walker, J. Hogenesch (2004)
A gene atlas of the mouse and human protein-encoding transcriptomes.Proceedings of the National Academy of Sciences of the United States of America, 101 16
-
Amar Kar, David Kuo, R. He, Jia-wei Zhou, Jane Wu (2005)
Tau Alternative Splicing and Frontotemporal DementiaAlzheimer Disease & Associated Disorders, 19
-
Philip Jones, R. Côté, L. Martens, Antony Quinn, Chris Taylor, William Derache, H. Hermjakob, R. Apweiler (2005)
PRIDE: a public repository of protein and peptide identifications for the proteomics communityNucleic Acids Research, 34
-
(2007)
Democratizing proteomics dataNature Biotechnology, 25
-
Zhijin Wu, R. Irizarry, R. Gentleman, F. Martínez-Murillo, Forrest Spencer (2004)
A Model-Based Background Adjustment for Oligonucleotide Expression ArraysJournal of the American Statistical Association, 99
-
L. Martens, H. Hermjakob, Philip Jones, M. Adamski, Chris Taylor, D. States, K. Gevaert, J. Vandekerckhove, R. Apweiler (2005)
PRIDE: The proteomics identifications databasePROTEOMICS, 5
-
S. Carr, R. Aebersold, M. Baldwin, A. Burlingame (2004)
The need for guidelines in publication of peptide and protein identification data: Working group on publication guidelines for peptide and protein identification data, 3
- Publisher
- Wiley
- Copyright
- "Copyright © 2008 Wiley Subscription Services, Inc., A Wiley Company"
- ISSN
- 1615-9853
- eISSN
- 1615-9861
- DOI
- 10.1002/pmic.200700761
- pmid
- 18283668
- Publisher site
- See Article on Publisher Site
Abstract
Large‐scale and high‐throughput proteomics experiments of specific samples provide substantial amounts of identified proteins and peptides, which increasingly find their way into centralized, public data repositories. These data typically have potential beyond the analyses performed by the original authors, and can therefore provide considerable added value by being reused for specific, unexplored enquiries. We here reanalyze two CNS‐related proteomics datasets, one from the HUPO's Brain Proteome Project, and one from a comprehensive analysis of cerebrospinal fluid in light of the expression of specific splice isoforms from CNS‐related genes. We also evaluate the empirically observed peptides of interest against predictions of their proteotypic character.
Journal
Proteomics – Wiley
Published: Mar 1, 2008
Keywords: ; ; ; ;