Access the full text.
Sign up today, get DeepDyve free for 14 days.
Tanya Yatsunenko, F. Rey, M. Manary, Indi Trehan, M. Dominguez-Bello, M. Contreras, M. Magris, G. Hidalgo, R. Baldassano, A. Anokhin, A. Heath, B. Warner, Jens Reeder, Justin Kuczynski, J. Caporaso, C. Lozupone, C. Lauber, J. Clemente, D. Knights, R. Knight, J. Gordon (2012)
Human gut microbiome viewed across age and geographyNature, 486
J. Caporaso, Justin Kuczynski, Jesse Stombaugh, K. Bittinger, F. Bushman, E. Costello, N. Fierer, Antonio Peña, Julia Goodrich, J. Gordon, G. Huttley, S. Kelley, D. Knights, J. Koenig, R. Ley, C. Lozupone, Daniel McDonald, B. Muegge, M. Pirrung, Jens Reeder, Joel Sevinsky, P. Turnbaugh, William Walters, Jeremy Widmann, Tanya Yatsunenko, Jesse Zaneveld, R. Knight (2010)
QIIME allows analysis of high-throughput community sequencing dataNature Methods, 7
C. Vael, S. Verhulst, V. Nelen, H. Goossens, K. Desager (2011)
Intestinal microflora and body mass index during the first three years of life: an observational studyGut Pathogens, 3
P. Pérez, J. Doré, M. Leclerc, F. Levenez, J. Benyacoub, P. Serrant, I. Segura-Roggero, E. Schiffrin, A. Donnet-Hughes (2007)
Bacterial Imprinting of the Neonatal Immune System: Lessons From Maternal Cells?Pediatrics, 119
T. Harder, R. Bergmann, G. Kallischnigg, A. Plagemann (2005)
Duration of breastfeeding and risk of overweight: a meta-analysis.American journal of epidemiology, 162 5
A. Eren, L. Maignien, W. Sul, L. Murphy, Sharon Grim, H. Morrison, M. Sogin, R. Freckleton (2013)
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene dataMethods in Ecology and Evolution, 4
K. Hunt, James Foster, L. Forney, Ursel Schütte, Daniel Beck, Z. Abdo, L. Fox, Janet Williams, M. McGuire, M. McGuire (2011)
Characterization of the Diversity and Temporal Stability of Bacterial Communities in Human MilkPLoS ONE, 6
L. Scheepers, J. Penders, J. Penders, Catherine Mbakwa, C. Thijs, M. Mommers, I. Arts (2014)
The intestinal microbiota composition and weight development in children: the KOALA Birth Cohort StudyInternational Journal of Obesity, 39
F. Bäckhed, Hao Ding, Ting Wang, L. Hooper, G. Koh, A. Nagy, C. Semenkovich, J. Gordon (2004)
The gut microbiota as an environmental factor that regulates fat storage.Proceedings of the National Academy of Sciences of the United States of America, 101 44
Ted Jost, C. Lacroix, C. Braegger, F. Rochat, C. Chassard (2014)
Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding.Environmental microbiology, 16 9
V. Martín, A. Maldonado-Barragán, L. Moles, M. Rodríguez-Baños, R. Campo, L. Fernández, J. Rodríguez, E. Jiménez (2012)
Sharing of Bacterial Strains Between Breast Milk and Infant FecesJournal of Human Lactation, 28
D. Knights, Justin Kuczynski, Emily Charlson, Jesse Zaneveld, M. Mozer, R. Collman, F. Bushman, R. Knight, S. Kelley (2011)
Bayesian community-wide culture-independent microbial source trackingNature Methods, 8
F. Bäckhed, J. Roswall, Yangqing Peng, Q. Feng, Huijue Jia, P. Kovatcheva-Datchary, Yin Li, Yan Xia, Hailiang Xie, Huanzi Zhong, M. Khan, Jianfeng Zhang, Junhua Li, L. Xiao, J. Al-Aama, Dongya Zhang, Ying Lee, D. Kotowska, Camilla Colding, V. Tremaroli, Ye Yin, S. Bergman, Xun Xu, L. Madsen, K. Kristiansen, J. Dahlgren, Jun Wang (2015)
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life.Cell host & microbe, 17 6
Patricio Rosa, B. Warner, Yanjiao Zhou, G. Weinstock, E. Sodergren, C. Hall-Moore, Harold Stevens, W. Bennett, N. Shaikh, L. Linneman, J. Hoffmann, A. Hamvas, E. Deych, Berkley Shands, W. Shannon, P. Tarr (2014)
Patterned progression of bacterial populations in the premature infant gutProceedings of the National Academy of Sciences, 111
M. Kalliomäki, M. Collado, S. Salminen, E. Isolauri (2008)
Early differences in fecal microbiota composition in children may predict overweight.The American journal of clinical nutrition, 87 3
J. Daft, T. Ptacek, Ranjit Kumar, C. Morrow, R. Lorenz (2015)
Cross-fostering immediately after birth induces a permanent microbiota shift that is shaped by the nursing motherMicrobiome, 3
J. Madan, A. Hoen, S. Lundgren, S. Farzan, K. Cottingham, H. Morrison, M. Sogin, Hongzhe Li, J. Moore, M. Karagas (2016)
Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants.JAMA pediatrics, 170 3
Tao Ding, P. Schloss (2014)
Dynamics and associations of microbial community types across the human bodyNature, 509
M. Dominguez-Bello, E. Costello, M. Contreras, M. Magris, G. Hidalgo, N. Fierer, R. Knight (2010)
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newbornsProceedings of the National Academy of Sciences, 107
P. Turnbaugh, R. Ley, M. Mahowald, V. Magrini, E. Mardis, J. Gordon (2006)
An obesity-associated gut microbiome with increased capacity for energy harvestNature, 444
Philip Ahern, J. Faith, J. Gordon (2014)
Mining the human gut microbiota for effector strains that shape the immune system.Immunity, 40 6
J. Koenig, A. Spor, Nicholas Scalfone, A. Fricker, Jesse Stombaugh, R. Knight, L. Angenent, R. Ley (2010)
Succession of microbial consortia in the developing infant gut microbiomeProceedings of the National Academy of Sciences, 108
R. Ley (2010)
Obesity and the human microbiomeCurrent Opinion in Gastroenterology, 26
M. Azad, T. Konya, H. Maughan, D. Guttman, C. Field, R. Chari, M. Sears, A. Becker, J. Scott, A. Kozyrskyj (2013)
Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 monthsCanadian Medical Association Journal, 185
Camilla Urbaniak, M. Angelini, G. Gloor, G. Reid (2016)
Human milk microbiota profiles in relation to birthing method, gestation and infant genderMicrobiome, 4
Richard White, J. Bjørnholt, D. Baird, T. Midtvedt, J. Harris, M. Pagano, Winston Hide, K. Rudi, B. Moen, N. Iszatt, S. Peddada, M. Eggesbø (2013)
Novel Developmental Analyses Identify Longitudinal Patterns of Early Gut Microbiota that Affect Infant GrowthPLoS Computational Biology, 9
(2002)
Determination of bacterial load b y real-time PCR using a broad-range (universal) probe and primers set. Microbiology
Sathish Subramanian, S. Huq, Tanya Yatsunenko, R. Haque, M. Mahfuz, M. Alam, Amber Benezra, J. DeStefano, Martin Meier, B. Muegge, Michael Barratt, Laura VanArendonk, Qunyuan Zhang, M. Province, W. Petri, T. Ahmed, J. Gordon (2014)
Persistent Gut Microbiota Immaturity in Malnourished Bangladeshi ChildrenNature, 510
Lawrence Gartner, Jane Morton, Ruth Lawrence, Audrey Naylor, Donna O'Hare, R. Schanler, A. Eidelman (2005)
Breastfeeding and the Use of Human MilkPediatrics, 115
R. Mackie, A. Sghir, H. Gaskins (1999)
Developmental microbial ecology of the neonatal gastrointestinal tract.The American journal of clinical nutrition, 69 5
J. Caporaso, C. Lauber, William Walters, Donna berg-Lyons, James Huntley, Noah Fierer, Noah Fierer, S. Owens, J. Betley, Louise Fraser, Markus Bauer, N. Gormley, Jack Gilbert, Jack Gilbert, Geoff Smith, R. Knight (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platformsThe ISME Journal, 6
K. Fujimura, A. Sitarik, S. Havstad, D. Lin, S. Levan, D. Fadrosh, A. Panzer, B. Lamere, E. Rackaityte, N. Lukacs, G. Wegienka, H. Boushey, D. Ownby, E. Zoratti, A. Levin, C. Johnson, S. Lynch (2016)
Neonatal gut microbiota associates with childhood multi–sensitized atopy and T–cell differentiationNature medicine, 22
P. Koleva, S. Bridgman, A. Kozyrskyj (2015)
The Infant Gut Microbiome: Evidence for Obesity Risk and Dietary InterventionNutrients, 7
Donovan Parks, G. Tyson, P. Hugenholtz, R. Beiko (2014)
STAMP: statistical analysis of taxonomic and functional profilesBioinformatics, 30 21
D. Faith (1992)
Conservation evaluation and phylogenetic diversityBiological Conservation, 61
C. Chehoud, A. Dryga, Y. Hwang, Dorottya Nagy‐Szakal, E. Hollister, R. Luna, J. Versalovic, R. Kellermayer, F. Bushman (2016)
Transfer of Viral Communities between Human Individuals during Fecal Microbiota TransplantationmBio, 7
S. Lax, Daniel Smith, Jarrad Hampton-Marcell, S. Owens, K. Handley, Nicole Scott, S. Gibbons, Peter Larsen, Benjamin Shogan, Sophie Weiss, J. Metcalf, L. Ursell, Y. Vázquez-Baeza, W. Treuren, Nur Hasan, Molly Gibson, R. Colwell, G. Dantas, R. Knight, J. Gilbert (2014)
Longitudinal analysis of microbial interaction between humans and the indoor environmentScience, 345
J. Stiverson, T. Williams, J. Chen, S. Adams, D. Hustead, P. Price, J. Guerrieri, J. Deacon, Z. Yu (2014)
Prebiotic Oligosaccharides: Comparative Evaluation Using In Vitro Cultures of Infants' Fecal MicrobiomesApplied and Environmental Microbiology, 80
Husen Zhang, J. DiBaise, A. Zuccolo, D. Kudrna, Michele Braidotti, Yeisoo Yu, P. Parameswaran, M. Crowell, R. Wing, B. Rittmann, R. Krajmalnik-Brown (2009)
Human gut microbiota in obesity and after gastric bypassProceedings of the National Academy of Sciences, 106
P. Turnbaugh, M. Hamady, Tanya Yatsunenko, B. Cantarel, A. Duncan, R. Ley, M. Sogin, W. Jones, B. Roe, J. Affourtit, M. Egholm, B. Henrissat, A. Heath, R. Knight, J. Gordon (2008)
A core gut microbiome in obese and lean twinsNature, 457
C. Gómez-Llorente, J. Plaza-Díaz, M. Aguilera, S. Muñoz-Quezada, M. Bermúdez-Brito, P. Peso-Echarri, Rosario Martínez-Silla, M. Vasallo-Morillas, L. Campaña‐Martín, I. Vives-Piñera, M. Ballesta-Martínez, Á. Gil (2013)
Three Main Factors Define Changes in Fecal Microbiota Associated With Feeding Modality in InfantsJournal of Pediatric Gastroenterology and Nutrition, 57
M. Langille, Jesse Zaneveld, J. Caporaso, Daniel McDonald, D. Knights, Joshua Reyes, J. Clemente, D. Burkepile, Rebecca Thurber, R. Knight, R. Beiko, C. Huttenhower (2013)
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequencesNature biotechnology, 31
M. Arrieta, Leah Stiemsma, P. Dimitriu, L. Thorson, Shannon Russell, Sophie Yurist-Doutsch, B. Kuzeljevic, Matthew Gold, Heidi Britton, D. Lefebvre, P. Subbarao, P. Mandhane, A. Becker, K. McNagny, M. Sears, T. Kollmann, Child Investigators, W. Mohn, S. Turvey, B. Finlay (2015)
Early infancy microbial and metabolic alterations affect risk of childhood asthmaScience Translational Medicine, 7
L. Hooper, D. Littman, A. Macpherson (2012)
Interactions Between the Microbiota and the Immune SystemScience, 336
Ramadass Balamurugan, G. George, J. Kabeerdoss, J. Hepsiba, Aarthy Chandragunasekaran, B. Ramakrishna (2009)
Quantitative differences in intestinal Faecalibacterium prausnitzii in obese Indian childrenBritish Journal of Nutrition, 103
Key PointsQuestionDo maternal breast milk and areolar skin bacterial communities transfer to the infant gut? FindingsIn this 12-month longitudinal study of 107 healthy mother-infant pairs, breastfed infants received 27.7% of their gut bacteria from breast milk and 10.4% from areolar skin during the first month of life. Bacterial diversity and composition changes were associated with the proportion of daily breast milk intake in a dose-dependent manner even after introduction of solid foods. MeaningMicrobes in mother’s breast milk seed the infant gut, including those associated with beneficial effects, underscoring the importance of breastfeeding in maturation of the infant gut microbiome.
JAMA Pediatrics – American Medical Association
Published: Jul 8, 2017
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.