Access the full text.
Sign up today, get DeepDyve free for 14 days.
P. Janssen, P. Frenzel (1997)
Inhibition of methanogenesis by methyl fluoride: studies of pure and defined mixed cultures of anaerobic bacteria and archaeaApplied and Environmental Microbiology, 63
Y. Teh, W. Silver, M. Conrad (2005)
Oxygen effects on methane production and oxidation in humid tropical forest soilsGlobal Change Biology, 11
R. Conrad (2002)
Control of microbial methane production in wetland rice fieldsNutrient Cycling in Agroecosystems, 64
L. Steinberg, J. Regan (2008)
Phylogenetic Comparison of the Methanogenic Communities from an Acidic, Oligotrophic Fen and an Anaerobic Digester Treating Municipal Wastewater SludgeApplied and Environmental Microbiology, 74
R. Amann, W. Ludwig, K. Schleifer (1995)
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.Microbiological reviews, 59 1
F. Garcia-Pichel, J. Belnap (2001)
Small-Scale Environments and Distribution of Biological Soil Crusts
Yuchen Liu, W. Whitman (2008)
Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic ArchaeaAnnals of the New York Academy of Sciences, 1125
T. Lueders, M. Manefield, M. Friedrich (2003)
Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients.Environmental microbiology, 6 1
P. Luton, Jonathan Wayne, R. Sharp, P. Riley (2002)
The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill.Microbiology, 148 Pt 11
F. Garcia-Pichel, J. Belnap (1996)
MICROENVIRONMENTS AND MICROSCALE PRODUCTIVITY OF CYANOBACTERIAL DESERT CRUSTS 1Journal of Phycology, 32
J. Belnap, B. Büdel, O. Lange (2001)
Biological Soil Crusts: Characteristics and Distribution
R. Conrad (1999)
Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sedimentsFEMS Microbiology Ecology, 28
Ai Miyashita, Hanako Mochimaru, Hiromi Kazama, A. Ohashi, Takashi Yamaguchi, T. Nunoura, K. Horikoshi, K. Takai, H. Imachi (2009)
Development of 16S rRNA gene-targeted primers for detection of archaeal anaerobic methanotrophs (ANMEs).FEMS microbiology letters, 297 1
Ralf Westram, K. Bader, E. Prüsse, Yadhu Kumar, H. Meier, F. Glöckner, W. Ludwig (2011)
46. ARB: A Software Environment for Sequence Data
Y Liu, W Whitman (2008)
Metabolic, phylogenetic, and ecological diversity of the methanogenic archaeaAnn NY Acad Sci, 1125
K. Ashelford, A. Weightman, J. Fry (2002)
PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database.Nucleic acids research, 30 15
OL Lange (2003)
Biological Soil Crusts
E. Pruesse, Christian Quast, K. Knittel, B. Fuchs, W. Ludwig, J. Peplies, F. Glöckner (2007)
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARBNucleic Acids Research, 35
T. Jeffrey, Gelwicks, '. t, J. Risatti (1994)
Carbon isotope effects associated with aceticlastic methanogenesisApplied and Environmental Microbiology, 60
Roey Angel, D. Matthies, R. Conrad (2011)
Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of OxygenPLoS ONE, 6
Scott Bintrim, T. Donohue, J. Handelsman, G. Roberts, R. Goodman (1997)
Molecular phylogeny of Archaea from soil.Proceedings of the National Academy of Sciences of the United States of America, 94 1
D. Wagner, A. Lipski, A. Embacher, A. Gattinger (2005)
Methane fluxes in permafrost habitats of the Lena Delta: effects of microbial community structure and organic matter quality.Environmental microbiology, 7 10
W. Ludwig, O. Strunk, Ralf Westram, L. Richter, H. Meier, Yadhukumar, Arno Buchner, Tina Lai, Susanne Steppi, Gangolf Jobb, Wolfram Förster, Igor Brettske, Stefan Gerber, Anton Ginhart, Oliver Gross, Silke Grumann, Stefan Hermann, R. Jost, A. König, T. Liß, Ralph Lüssmann, M. May, Björn Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, Norbert Stuckmann, Alexander Vilbig, M. Lenke, T. Ludwig, A. Bode, K. Schleifer (2004)
ARB: a software environment for sequence data.Nucleic acids research, 32 4
A. Stams, C. Plugge (2009)
Electron transfer in syntrophic communities of anaerobic bacteria and archaeaNature Reviews Microbiology, 7
Roey Angel, R. Conrad (2009)
In situ measurement of methane fluxes and analysis of transcribed particulate methane monooxygenase in desert soils.Environmental microbiology, 11 10
Jimin Pei, N. Grishin (2007)
PROMALS: towards accurate multiple sequence alignments of distantly related proteinsBioinformatics, 23 7
S. Fetzer, F. Bak, R. Conrad (1993)
Sensitivity of methanogenic bacteria from paddy soil to oxygen and desiccationFEMS Microbiology Ecology, 12
RK Thauer, K Jungermann, K Decker (1977)
Energy conservation in chemotrophic anaerobic bacteriaMicrobiol Mol Biol Rev, 41
(2002)
Encyclopedia of Environmental Microbiology 6 Volume Set
C. Woese, G. Fox (1977)
Phylogenetic structure of the prokaryotic domain: The primary kingdomsProceedings of the National Academy of Sciences of the United States of America, 74
WB Whitman, T Bowen, D Boone (2006)
The Prokaryotes
R. Großkopf, P. Janssen, W. Liesack (1998)
Diversity and Structure of the Methanogenic Community in Anoxic Rice Paddy Soil Microcosms as Examined by Cultivation and Direct 16S rRNA Gene Sequence RetrievalApplied and Environmental Microbiology, 64
O. Lange (2001)
Photosynthesis of Soil-Crust Biota as Dependent on Environmental Factors
Youngseob Yu, Changsoo Lee, Jaai Kim, Seokhwan Hwang (2005)
Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction.Biotechnology and bioengineering, 89 6
T. Ochsenreiter, Drazenka Selezi, A. Quaiser, Liza Bonch-Osmolovskaya, C. Schleper (2003)
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR.Environmental microbiology, 5 9
Chi-Te Liu, T. Miyaki, T. Aono, H. Oyaizu (2008)
Evaluation of Methanogenic Strains and Their Ability to Endure Aeration and Water StressCurrent Microbiology, 56
Daniela Degelmann, S. Kolb, M. Dumont, J. Murrell, Harold Drake (2009)
Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil.FEMS microbiology ecology, 68 3
R Thauer, D Zinkhan, A. Spormann (1989)
Biochemistry of acetate catabolism in anaerobic chemotrophic bacteria.Annual review of microbiology, 43
F. Garcia-Pichel (2003)
Desert Environments: Biological Soil Crusts
Yanli Yuan, R. Conrad, Yahai Lu (2009)
Responses of methanogenic archaeal community to oxygen exposure in rice field soil.Environmental microbiology reports, 1 5
A. Poplawski, L. Mårtensson, Ingvild Wartiainen, U. Rasmussen (2007)
Archaeal diversity and community structure in a Swedish barley field: Specificity of the EK510R/(EURY498) 16S rDNA primer.Journal of microbiological methods, 69 1
Andreas Kiener, Thomas Leisinger (1983)
Oxygen sensitivity of methanogenic bacteria.Systematic and applied microbiology, 4 3
R. Thauer, K. Jungermann, K. Decker (1977)
Energy conservation in chemotrophic anaerobic bacteriaBacteriological Reviews, 41
J. Skujins (1991)
Semiarid lands and deserts: soil resource and reclamation.
T. Phelps, J. Zeikus (1984)
Influence of pH on Terminal Carbon Metabolism in Anoxic Sediments from a Mildly Acidic LakeApplied and Environmental Microbiology, 48
Roey Angel, Roey Angel, M. Soares, E. Ungar, O. Gillor (2010)
Biogeography of soil archaea and bacteria along a steep precipitation gradientThe ISME Journal, 4
Sanae Sakai, R. Conrad, W. Liesack, H. Imachi (2010)
Methanocella arvoryzae sp. nov., a hydrogenotrophic methanogen isolated from rice field soil.International journal of systematic and evolutionary microbiology, 60 Pt 12
C. Schleper, W. Holben, H. Klenk (1997)
Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sedimentsApplied and Environmental Microbiology, 63
H. Yao, R. Conrad, R. Wassmann, H. Neue (1999)
Effect of soil characteristics on sequential reduction and methane production in sixteen rice paddy soils from China, the Philippines, and ItalyBiogeochemistry, 47
C. Woese, O. Kandler, M. Wheelis (1990)
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.Proceedings of the National Academy of Sciences of the United States of America, 87
A. Gattinger, M. Höfle, M. Schloter, A. Embacher, F. Böhme, J. Munch, M. Labrenz (2007)
Traditional cattle manure application determines abundance, diversity and activity of methanogenic Archaea in arable European soil.Environmental microbiology, 9 3
S. Fetzer, R. Conrad (1993)
Effect of redox potential on methanogenesis by Methanosarcina barkeriArchives of Microbiology, 160
K. Takai, K. Horikoshi (1999)
Genetic diversity of archaea in deep-sea hydrothermal vent environments.Genetics, 152 4
W. Whitman, T. Bowen, D. Boone, A. Balows, H. Trüper, M. Dworkin, W. Harder, K. Schleifer (1992)
8 The Methanogenic Bacteria
R. Hedderich, W. Whitman (2006)
Physiology and Biochemistry of the Methane-Producing Archaea
ER L.ANNEGLOV (2003)
Molecular analysis of methanogenic archaeal communities in managed and natural upland pasture soils
D. Goevert, R. Conrad (2009)
Effect of Substrate Concentration on Carbon Isotope Fractionation during Acetoclastic Methanogenesis by Methanosarcina barkeri and M. acetivorans and in Rice Field SoilApplied and Environmental Microbiology, 75
K. Küsel, H. Drake (1994)
Acetate Synthesis in Soil from a Bavarian Beech ForestApplied and Environmental Microbiology, 60
C. Woese, G. Fox (1978)
Methanogenic bacteriaNature, 273
R. Conrad (2005)
Quantification of methanogenic pathways using stable carbon isotopic signatures: a review and a proposalOrganic Geochemistry, 36
J. Krzycki, W. Kenealy, M. Deniro, J. Zeikus (1987)
Stable Carbon Isotope Fractionation by Methanosarcina barkeri during Methanogenesis from Acetate, Methanol, or Carbon Dioxide-HydrogenApplied and Environmental Microbiology, 53
A. Zehnder (1988)
Biology of anaerobic microorganisms
C. Schleper, G. Jurgens, M. Jonuscheit (2005)
Genomic studies of uncultivated archaeaNature Reviews Microbiology, 3
K. Glissmann, R. Conrad (2002)
Saccharolytic activity and its role as a limiting step in methane formation during the anaerobic degradation of rice straw in rice paddy soilBiology and Fertility of Soils, 35
V. Peters, R. Conrad (1996)
Sequential reduction processes and initiation of CH4 production upon flooding of oxic upland soilsSoil Biology & Biochemistry, 28
E. Delong (1992)
Archaea in coastal marine environments.Proceedings of the National Academy of Sciences of the United States of America, 89
A. Stamatakis (2006)
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics, 22 21
J. Auguet, A. Barberán, E. Casamayor (2010)
Global ecological patterns in uncultured ArchaeaThe ISME Journal, 4
Tanya Soule, I. Anderson, Shannon Johnson, Scott Bates, F. Garcia-Pichel (2009)
Archaeal populations in biological soil crusts from arid lands in North AmericaSoil Biology & Biochemistry, 41
E. Delong (1998)
Everything in moderation: archaea as 'non-extremophiles'.Current opinion in genetics & development, 8 6
S. Burggraf, H. Huber, K. Stetter (1997)
Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data.International journal of systematic bacteriology, 47 3
Ke Ma, Yahai Lu (2011)
Regulation of microbial methane production and oxidation by intermittent drainage in rice field soil.FEMS microbiology ecology, 75 3
R. Conrad, P. Claus, P. Casper (2009)
Characterization of stable isotope fractionation during methane production in the sediment of a eutrophic lake, Lake Dagow, GermanyLimnology and Oceanography, 54
F. Guérin, G. Abril, A. Junet, M. Bonnet (2008)
Anaerobic decomposition of tropical soils and plant material: Implication for the CO2 and CH4 budget of the Petit Saut ReservoirApplied Geochemistry, 23
A. Ueki, K. Ono, A. Tsuchiya, K. Ueki (1997)
SURVIVAL OF METHANOGENS IN AIR-DRIED PADDY FIELD SOIL AND THEIR HEAT TOLERANCEWater Science and Technology, 36
V. Radl, A. Gattinger, A. Chroňáková, A. Němcová, J. Čuhel, M. Šimek, J. Munch, M. Schloter, D. Elhottová (2007)
Effects of cattle husbandry on abundance and activity of methanogenic archaea in upland soilsThe ISME Journal, 1
S. Leininger, T. Urich, M. Schloter, L. Schwark, J. Qi, G. Nicol, J. Prosser, S. Schuster, C. Schleper (2006)
Archaea predominate among ammonia-oxidizing prokaryotes in soilsNature, 442
Jean-Louis Garcia, B. Patel, B. Ollivier (2000)
Taxonomic, phylogenetic, and ecological diversity of methanogenic Archaea.Anaerobe, 6 4
V. Peters, R. Conrad (1995)
Methanogenic and other strictly anaerobic bacteria in desert soil and other oxic soilsApplied and Environmental Microbiology, 61
Yahai Lu, R. Conrad (2005)
In Situ Stable Isotope Probing of Methanogenic Archaea in the Rice RhizosphereScience, 309
A. West, S. Schmidt (2002)
Endogenous Methanogenesis Stimulates Oxidation of Atmospheric CH4 in Alpine Tundra SoilMicrobial Ecology, 43
B. Nüsslein, W. Eckert, R. Conrad (2003)
Stable isotope biogeochemistry of methane formation in profundal sediments of Lake Kinneret (Israel)Limnology and Oceanography, 48
R. Roy, H. Klüber, R. Conrad (1997)
Early initiation of methane production in anoxic rice soil despite the presence of oxidantsFEMS Microbiology Ecology, 24
W. Knight, J. Skujins (1991)
Chemistry of arid region soils.
The ISME Journal – Unpaywall
Published: Nov 10, 2011
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.